Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02295 ATGGCCACTGTAGCAACAAGTGGAATAGGAGCAGGGTTAACAAAGCTCCAAGCAAACAAAGGAAAGCACAACAAATCCCTCTTTCTGGGCCATGGATTCAGAATCAAACCTTCTTCTCTACCATGCAGCAGTAGAAAGAAGCCTCCTTTTCAAGTGTTTGCATTAGGTGGTGGTGGTGGTGCAAGTGAATGGGTTCTTGATTCCATTCACAACCTCTTTGTGGGTGTTGGGGTTGGTCTCCCTTGCACTGTGATGGAGTGTGGGGACCTAATTTATAGGAGCACACTACCAAAGTCAAATGGGTTGACTCTTACAGTTCCTGGTGCGGTTCTTGCTTTGAGTGCTCTCTCTTACCTTTGGGCCACACCTGGGGTTGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAGAGATTGTTCAGACCCACTTATAGAAAGGATGACTTTGTTGTGGGCAAGAAGTTAGGGGAGGGATCCTTTGGAGTAGTTTATAGAGCAACACCGTCCAAGCCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAAGCTACTGAATATGGTGCCGTAGAAATTTGGATGAATGAGCGCGTACGGAGAGCTTGTGCAAGCAGCTGCGCAGATTTTCTATACGGGTTTCTTGAGAGCTCTTCAAAGAAGGCTCCCGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCTACCCTAGCTGACTTGCTGCAGAGTAGAGAATTTCCATACAATGTTGAAACATTAATTCTGGGTGAGGTTCAGGACTTGCCGAAGGGAGTCGAAAGAGAAAACAGAATTATTCAAACAATCATGAGGCAACTGTTGTTTGCATTAGACGGTCTTCACTCAACTGGCATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCTGAAGGGTCGCGAACATTCAAAATCATTGATCTTGGAGCTGCTGCAGACCTGCGAGTTGGCATTAACTATATTCCCAAGGAGTTTCTCTTGGATCCAAGATATGCCGCACCAGAGCAATATATCATGAGCACACAAACTCCATCTGCACCCTCGGCTCCTGTAGCAACTGCACTCTCACCGGTTTTATGGCAGTTGAATTTGCCCGACAGATTTGATATCTATAGTGCTGGTCTGATCTTTCTTCAAATGGCATTCCCGGGTTTACGCACCGATAATGGCCTTATACAATTCAACCGTCAATTAAAGAGGTGCGACTATGACTTGGTTACTTGGAGAAAAAGCGTAGAGCCTCGATGTGGCCCTGAACTTAGGAGGGGATTTGATTTGTTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGACATCAATGGTTAGATACAAAGCAAGGCAAAGGCTGAGCGCAAAAGCGGCATTGACTCATCCTTTCTTCGATAGAGAAGGTTTGTTGGCACTATCTTTCATGCAAAATCTGAGGCTGCAGCTCTTACGAGCGACTCAGCAGGATTACGGAGAAGCTGCCAAGTGGGTCACTGAGCTAATGGCAAAATCAGGAACTGAGAAGGATGGTGGATTCACTGAAGCTCAGCTCCTTGAACTAAAAGAAATTGAACCCAAGAAGAAGAAGAAGGCTAATGCACAGAGAAACGCTCTAGCTTCTGCACTTAAACTTCAGAGGAAAATCATTAAAACCTTAAATGAGAGTATGGATGAGCTCAGCAGACGCAGGAAAAGCATTTGGTGGAGCAGGTGGATCCCAAGAGAGGAATGA 1743 0.4521 MATVATSGIGAGLTKLQANKGKHNKSLFLGHGFRIKPSSLPCSSRKKPPFQVFALGGGGGASEWVLDSIHNLFVGVGVGLPCTVMECGDLIYRSTLPKSNGLTLTVPGAVLALSALSYLWATPGVAPGFFDMFVLAFVERLFRPTYRKDDFVVGKKLGEGSFGVVYRATPSKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFLYGFLESSSKKAPEYWLIWRFEGDATLADLLQSREFPYNVETLILGEVQDLPKGVERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRTDNGLIQFNRQLKRCDYDLVTWRKSVEPRCGPELRRGFDLLDLDGGIGWELLTSMVRYKARQRLSAKAALTHPFFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWVTELMAKSGTEKDGGFTEAQLLELKEIEPKKKKKANAQRNALASALKLQRKIIKTLNESMDELSRRRKSIWWSRWIPREE 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02295 580 Gene3D Transferase(Phosphotransferase) domain 1 259 472 - -
Aip05g02295 580 Pfam Protein kinase domain 152 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g02295 580 Gene3D Phosphorylase Kinase; domain 1 137 230 - -
Aip05g02295 580 Coils Coil 546 566 - -
Aip05g02295 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 15 580 IPR044803 GO:0004674|GO:0009579
Aip05g02295 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 15 580 - -
Aip05g02295 580 ProSitePatterns Protein kinases ATP-binding region signature. 157 183 IPR017441 GO:0005524
Aip05g02295 580 ProSiteProfiles Protein kinase domain profile. 151 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g02295 580 CDD STKc_SNT7_plant 155 468 - -
Aip05g02295 580 SMART serkin_6 151 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g02295 580 SUPERFAMILY Protein kinase-like (PK-like) 145 471 IPR011009 -
Aip05g02295 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02295 Aip-Chr5 110175621 110181443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02295 268 469 Core Cell Cycle Gene Families AT2G38620 31.163 4.04e-17 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Aip05g02295 Pkinase 1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02295 - - gmx:100778588 900.197