Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02288 ATGGATGCTATAAAAGAGCATGCTTTGTTGAATGGAAAGGATAATAGATATGTGTCACCTAAATATGCAAGCACTGGTATGCTTAATGAGTGTAGTGATATGTATAGCTTTGGAGTTCTTCTCATGGAGATAATTACAGGAAGATCCCCCATTGATTATTTTAGTCCTCCTAGAGAGATGAATTTGGTTGATTGGTTTAAGGGAATGGTAGCAAAACATCGTGGTGAAGAGTTAGtgtaa 240 0.3625 MDAIKEHALLNGKDNRYVSPKYASTGMLNECSDMYSFGVLLMEIITGRSPIDYFSPPREMNLVDWFKGMVAKHRGEELV 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02288 79 Gene3D Transferase(Phosphotransferase) domain 1 10 79 - -
Aip05g02288 79 PANTHER OS01G0323000 PROTEIN 17 79 - -
Aip05g02288 79 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 17 79 - -
Aip05g02288 79 SUPERFAMILY Protein kinase-like (PK-like) 16 69 IPR011009 -
Aip05g02288 79 Pfam Protein tyrosine and serine/threonine kinase 16 61 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02288 Aip-Chr5 108894095 108894499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02288 17 71 Trihelix Transcription Factor Family AT1G68690 47.273 1.45e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Aip05g02288 PK_Tyr_Ser-Thr 5.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02288 - - ath:AT4G34500 116.316