Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02286 ATGATGAAAAAGGAAGAAGATCAAGGGCAGTGTTCTCCGCAAGCAATCCAGAACACCATTCAAAGCTACCAAGAACAGTTATTCCTTCAGCAGCAGATGCAGCATCACAACCCAAACGGTACGGATCTTTATATCGGCGGCGGTGGAAGTGGAAGGGGGTTAGTGTTCCCTCCTGAAGCCTCTCCAATCATGCAACCACCATGGTCCATGTCACCGGTTCACCCTTTCAGCCAAGCCGGTCCGGTTCACCCGGTCTCCCATCATAATGATAACAATAATAACCACCACGATCCTTTCCTTGTTCCTCCACCGCCTCCGTCGCCATACGCAAGTTTCTTCAATCGAAGGGTCCCGTCTCTGCAGTTCGCATACGAGGGCCCTTCTTCTGAACACGTCAGGATCATATCTGACTCGCTTGTTGGGCCCATGGTTCATCCCGGTTCTGTGGGCCCGTTTGGGCTCCAGTCCGAGTTAGGCAAGATGACTGCCCAAGAAATCATGGAGGCTAAGGCTCTTGCGGCCTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAACTCCGTAGCTTGTTGCCAAACACAACTAAAACAGATAAAGCTTCATTGCTAGCAGAAGTGATTCAGCACGTGAAGGAACTGAAGCGTCAAACTTCACTGATAGCAGAAACGAATCCAGTTCCCACAGAATCCGACGAGTTAACGGTGGATACGACGGACGAAGACGGAAGGTTTGTAATCAAAGCGTCTTTATGCTGCGAAGACCGTTCAGATCTCTTGCCCGACCTCATCAAGACACTGAAGGAACTCAAGCTGAGAACCCTCAAAGCCGAGATCACCACACTCGGCGGCCGCATGAAGAATGTGTTGTTCATCACGGCGGACGAAGAAGATTATTCTAGTAGCAACGCCGGCAGTGGCGGAGGAGAGCAAAGCCTTCAGCTGGGTCATTATTGTATTAGCTCAATACAAGAAGCGCTGAGGGCTGTCATGGAGAAAGGTGGTGGTGATGAATCTGCTTCTGGGAATGTTAAGAGGCAAAGGACGAATATCAATATCCTTGAACAAAGGTCTTTATGA 1104 0.4964 MMKKEEDQGQCSPQAIQNTIQSYQEQLFLQQQMQHHNPNGTDLYIGGGGSGRGLVFPPEASPIMQPPWSMSPVHPFSQAGPVHPVSHHNDNNNNHHDPFLVPPPPPSPYASFFNRRVPSLQFAYEGPSSEHVRIISDSLVGPMVHPGSVGPFGLQSELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETNPVPTESDELTVDTTDEDGRFVIKASLCCEDRSDLLPDLIKTLKELKLRTLKAEITTLGGRMKNVLFITADEEDYSSSNAGSGGGEQSLQLGHYCISSIQEALRAVMEKGGGDESASGNVKRQRTNINILEQRSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02286 367 Gene3D - 168 229 IPR036638 GO:0046983
Aip05g02286 367 PANTHER TRANSCRIPTION FACTOR BHLH30 84 362 IPR045847 GO:0003700|GO:0006355
Aip05g02286 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 231 IPR036638 GO:0046983
Aip05g02286 367 PANTHER TRANSCRIPTION FACTOR BHLH30 84 362 - -
Aip05g02286 367 CDD bHLH_AtAIG1_like 168 245 - -
Aip05g02286 367 SMART finulus 179 228 IPR011598 GO:0046983
Aip05g02286 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Aip05g02286 367 Pfam Helix-loop-helix DNA-binding domain 176 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02286 Aip-Chr5 108754412 108758815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02286 18 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.813 5.26e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g02286 HLH 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02286 - - gmx:100779653 434.491