Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02236 ATGGACAAAGATCATCACATTCACAACTATTCGGCACCCATGCCCCCAACCCCAAGCTTCAACACACTAGACTACTCTCTTGATCATAATCACCACCACCACCATCTCATGCAGTTTCGCCAAGGCGAATCTTCTGGAGAACACAGCAACGGGATAGCCGATTACATCCCTCAGCAACAGCAACAACTGCCGCCAGCACCGCCGCCATCGTGTTTTTATAATGCAAACTCTTCTTCCTTTGATAAGCTCAGTTTCGCGGATGTGATGCAGTTTGCAGATTTCGGACCAAAGTTAGCCTTAAACCAAGGCAAGCCCTGCGAAGAACCGGGGATTGACCCGGTCTACTTTCTCAAATTCCCGGTCTTAAATGATAAGATGGATGAACACAATATCATGATGATGAATCACGAAAGCGGAGGCTGCAGCGACGGTGGTGGTGGCAGAGAAGAAGTAGAAACAGAAGCAGAAAACAATAATGATGAGAGGTTCAACAACGGGGAAGAGGAAGATGCTGCCATGGGTGGAGCAGATCAAGAAGATGGAAGGATGAAAGGAGAAGAAGAAACTGCACGCATTTCCGAAGACAACAACTCAGTGCAGATTCGGTTCCTTGGCCATGGTGAAGATCTGGTGCTGAACCAGAAGAGGAACAACAACTCAACGGCGTTGATGCAGGAGAACAACAAGAACATGAAGAGGAAGAGGCCGAGAACCGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGCATGACTCACATCGCTGTTGAAAGGAACCGAAGGAAACAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCCTACGTTCAAAGGGGTGATCAAGCATCGATAATTGGAGGAGCTATAGAGTTTGTGAGAGAATTGGAGCAACTACTTCAGTGCTTGGAATCACAAAAGAGAAGAAGGCTACTTGGAGAAGCACAAACAAGACAGGTCGGGGATTCGAATCTCGGAACACAACAGCAGCAGCCTCTTCAACCTCCTTTCTATCCGCCATTGGCATCGCCAAGTGAGCAGATGAAGCTGGTGGAGTTGGAGACCGGACTCCGCGAAGAAACCGCAGAGAGCAAGTCTTGCTTTGCTGATGTTGAAGTCAAGCTTCTCGGATTCGACGCCATGATCAAGATCCTTTCCAGGAGGAGGCCAGGCCAGTTGATCAAAACTATTGCTGCACTTGAAGATCTTCAATTAATTATCCTTCACACCAACATTACCACCATCGAACAGACAGTACTTTATTCTTTCAATGTCAAGGTGGCTAGTGAGTCAAGGTTCACCGCAGATGATATAGCCGGCTCCGTTCAACAGATATTCAGTTTCATCCATGCAAACACCAGCATATAA 1374 0.4723 MDKDHHIHNYSAPMPPTPSFNTLDYSLDHNHHHHHLMQFRQGESSGEHSNGIADYIPQQQQQLPPAPPPSCFYNANSSSFDKLSFADVMQFADFGPKLALNQGKPCEEPGIDPVYFLKFPVLNDKMDEHNIMMMNHESGGCSDGGGGREEVETEAENNNDERFNNGEEEDAAMGGADQEDGRMKGEEETARISEDNNSVQIRFLGHGEDLVLNQKRNNNSTALMQENNKNMKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQTRQVGDSNLGTQQQQPLQPPFYPPLASPSEQMKLVELETGLREETAESKSCFADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASESRFTADDIAGSVQQIFSFIHANTSI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02236 457 MobiDBLite consensus disorder prediction 139 196 - -
Aip05g02236 457 SMART finulus 253 304 IPR011598 GO:0046983
Aip05g02236 457 Pfam Helix-loop-helix DNA-binding domain 248 299 IPR011598 GO:0046983
Aip05g02236 457 Gene3D - 238 313 IPR036638 GO:0046983
Aip05g02236 457 MobiDBLite consensus disorder prediction 175 193 - -
Aip05g02236 457 PANTHER TRANSCRIPTION FACTOR FAMA 37 456 - -
Aip05g02236 457 PANTHER TRANSCRIPTION FACTOR FAMA 37 456 IPR044283 GO:0003700|GO:0010052
Aip05g02236 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 298 IPR011598 GO:0046983
Aip05g02236 457 MobiDBLite consensus disorder prediction 147 168 - -
Aip05g02236 457 MobiDBLite consensus disorder prediction 229 249 - -
Aip05g02236 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 314 IPR036638 GO:0046983
Aip05g02236 457 CDD bHLH_AtFAMA_like 250 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02236 Aip-Chr5 105408286 105410919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02236 42 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 56.264 2.56e-140 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g02236 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02236 - - ahf:112750491 829.706