Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02210 ATGAGTTCTATTGCACTTTGCTACTTGCAGGGTGGGACTGTTTCGGCTATGACATTAGATATGGGAATACTTCTTGGATTGGGAGCTCCTGAGATTGTTCCAGATTATCCAATTCTTTCTGTTGACAACCTAGCAGATCAAATAGCCGAGGTTCTCAACTTTTTTGGTCTTAGTGCAGTAATGTGCATAGGAGTAGCTGCCGAGGCTTACATTCTTACCTTATTTGCTGTCATGTCAAATTTACTCTATTTTTGTGGCATGTGCGGGGTGGCAAAGGAAATGTTGCTGAAGCGGTACTATAGCAAGGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAATAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAAGTGTCATTGGCAATCTGTTTGATGCTTTCTTGAAATCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATATATTTCTTGTCCGTGGAGGGATGAGAAGTGTGGAGTTTAAGGTTATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTAAAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCTGGATGAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGAGTGAAACCACCCAAAGGTATTCTACTTTATGGACCTCCTGGTTCCGGGAAGACACTGATAGCAAGAGCTATTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGAGTCTTATGGATGGATTGAAATCTCGTGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAATAGCATTGACCCAGCATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATGGTGTTCCTGATGAAATTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAACATGA 1287 0.4305 MSSIALCYLQGGTVSAMTLDMGILLGLGAPEIVPDYPILSVDNLADQIAEVLNFFGLSAVMCIGVAAEAYILTLFAVMSNLLYFCGMCGVAKEMLLKRYYSKGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIESVIGNLFDAFLKSYFLEAYRPVRKGDIFLVRGGMRSVEFKVIETDPGEYCVVAPDTKIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAIANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLSLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDMVFLMKLADLKFFVYTLKT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02210 428 Pfam Ndr family 28 77 IPR004142 -
Aip05g02210 428 Pfam Cell division protein 48 (CDC48), domain 2 170 230 IPR004201 -
Aip05g02210 428 ProSitePatterns AAA-protein family signature. 382 400 IPR003960 GO:0005524|GO:0016887
Aip05g02210 428 Gene3D - 150 244 - -
Aip05g02210 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 410 IPR027417 -
Aip05g02210 428 Gene3D - 99 149 - -
Aip05g02210 428 SUPERFAMILY Cdc48 domain 2-like 149 241 IPR029067 -
Aip05g02210 428 PANTHER AAA-FAMILY ATPASE 101 410 - -
Aip05g02210 428 Pfam ATPase family associated with various cellular activities (AAA) 282 409 IPR003959 GO:0005524|GO:0016887
Aip05g02210 428 Pfam Cell division protein 48 (CDC48), N-terminal domain 102 148 IPR003338 -
Aip05g02210 428 Gene3D - 245 409 IPR027417 -
Aip05g02210 428 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 101 410 - -
Aip05g02210 428 Gene3D alpha/beta hydrolase 24 80 IPR029058 -
Aip05g02210 428 SMART CDC48_N_2 87 150 IPR003338 -
Aip05g02210 428 SMART AAA_5 278 415 IPR003593 -
Aip05g02210 428 SMART CDC48_2_2 167 233 IPR004201 -
Aip05g02210 428 SUPERFAMILY ADC-like 102 147 IPR009010 -
Aip05g02210 428 CDD AAA 248 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02210 Aip-Chr5 101766555 101770971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02210 247 410 Calmodulin-binding Proteins AT3G56690 46.341 9.46e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02210 K13525 - aip:107621123 650.588