Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02199 ATGAAAAGTGAAAACCCTAAAGTCACAGAGCTCATTACCCTAACAGCGGCGGCGCTCTTCACCAAACATAGAGCTCATCGCCAGTGCCCTCACTCTCTCCCCAATAACACTCGTTGGTCAACCTCGTTCCAACCCTCTCTAGCAACCCCTCCCTGTGGTAGTGCTCAACTGCTGCTATGTGATGCTGAACTGCTACTGCTTTGCCTATTCTGTTATTCTAGTTTTTCTACATCAACTATCAGTAGAGCAGGGGACTCCTACTGGGAGAAAAAGTCTAAGGCTGCTGGTCTTAGGGCAACTGCAAACCATTTGCATGATTTGAATCCTGAGGATGTGCACGAAATTCTTAGGCAAGCTGCTGAAATTTTTGAAGGAATAGGAATAATTAATATTGTAGCTCAATGTCTTTCAGATTTGGGGGATCATGAAAAAGCTGGCAGCTTGTGCCCTGGCTTTGTTATGCACCCAAGTGAGGACGAAGAAGTCCATTTGAATCGGGAATTAGGAAATGCAAGGAATGATCTTGTGGACGAAGACCCTGGTTTTGACCCTCCTTTGAACTCTGCTATCTCATTATCGCTATTGTTCTCTGCTCACTTGGTTATGCTGATTGGGTATTCCATATTAAAACTTCTAGTGGGTGAAATGGGAACTGTGATTACCTTTGGCGCAAGGGAGTCTTGTGAATTCTTCCATGATCGCATGAAGGGCAAAAGtgatgaagTTGGTGAAATGGGAACTGTGATTACCTTTGGCGCAAGGGAGTCTTGTGAATTCTTCCATGATCGCATGAAGGGCAAAAGtgatgaaggtaaagtcagaaaaattttGAAGGTGGAACATAACTTTTACTCTTTGGCATCAAGACAAAGAAGAGGCCCCATGCATGCATACATGATATGA 903 0.4286 MKSENPKVTELITLTAAALFTKHRAHRQCPHSLPNNTRWSTSFQPSLATPPCGSAQLLLCDAELLLLCLFCYSSFSTSTISRAGDSYWEKKSKAAGLRATANHLHDLNPEDVHEILRQAAEIFEGIGIINIVAQCLSDLGDHEKAGSLCPGFVMHPSEDEEVHLNRELGNARNDLVDEDPGFDPPLNSAISLSLLFSAHLVMLIGYSILKLLVGEMGTVITFGARESCEFFHDRMKGKSDEVGEMGTVITFGARESCEFFHDRMKGKSDEGKVRKILKVEHNFYSLASRQRRGPMHAYMI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02199 300 Gene3D Transcriptional Coactivator Pc4; Chain A 241 286 IPR009044 GO:0003677|GO:0006355
Aip05g02199 300 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 242 280 - -
Aip05g02199 300 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 210 241 - -
Aip05g02199 300 Pfam Whirly transcription factor 243 281 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aip05g02199 300 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 210 241 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aip05g02199 300 SUPERFAMILY ssDNA-binding transcriptional regulator domain 242 281 IPR009044 GO:0003677|GO:0006355
Aip05g02199 300 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 242 280 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02199 Aip-Chr5 100028646 100033277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02199 242 280 Whirly Transcription Factor Family AT1G14410 74.359 1.24e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Aip05g02199 Whirly 7.1e-09 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02199 - - adu:107489179 127.872