Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02190 ATGAGTGACAAAGAGAAGTTTGAGCTTGACAGAAAGGAGGATCCCATGAATTATTCCACCGGAATGGCCTCGGATCGGAGATTCGGAGGTTCCAATCTTCTGAATTCATCTGTGGGTTTGGCTGGCAGAGGGGATCTAAATGGTTCCTCTTCATGTTCCTCTGCTTCCCTAGTGGACTCCTTTGGCCCAAACTTCTGGGACACTCCGACGAATTCCCAGAACTTGGGGTTTTGTGGCATCAATGTTCACAACAGTGGGAGCTCTTTGAACCCAATTGAAATCAGAAAAGATGGGTTTGGATTTGGAAGAGGTGGTCATGATCATGGAACACTTGAAATGGGTTGGAATCAAGGTAATGGCTTTATACCAAATGAGTCTGCAATGTTCCCCCAGAACTTGTCTCGGTTTCCAAGTGATTCTGGATTTATTGAGCGTGCAACGAGATTCTCGTGCTTTGGTGGAGGGGATTTCGGAGATATGGTGAATGCTTATGGGATTCCTCAATCCATGGGCCCTTATGCTGGTACCGGTGGTGAGGCAATTCACCAAGCAAGAGATGGAGGACAACCTCAAGAGAGCAATCCGAATGAAGCTGAAGCTGTGAAAGATGCGACACCATCTGTCGAGTATCTTGCTACTAAAGCTAGCCCGCTCAAGAATGATAAAAGAAGTGAAAACCATGTAATGCCTCAAAATGAAGGGCAACAAGGTCCTTCTAGGCCTCCGAATGAGACTGACCGAGCCAAATCTAGCGATGATGGCGGTGTTCAAGATGACTCCCCAATGTTGGATGGTGTTAGCGACGAACCTTGTCTTAAAGGACTAGATTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCCGATAATGATAAAGCTGTTGAACTACCTACGGAAGGTGCAGGGGATATCTCTGAGAGCCAACAAAAGGGAGAGCAGGAACCTACTCCAACAAACAAGGCTTCTGGAAAGAATGCCAAACAAGGGACTCAAGTTTCAGATCCACCTAAGGAGGAATACATACATGTCAGGGCTCGGCGGGGTCAAGCAACTAATAGCCACAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTTACTGGCAAGGCTGTTATGCTCGATGAAATAATTAACTATGTACAGTCGCTTCAACGACAGGTTGAGTTCTTGTCCATGAAACTCGCAACTGTAAATCCGCGGCTGGATTTTGATATTGAAGGACTTATCCCTAAAGATATTCTTCACCAACGGCCGGGTCCTTCTGCATTGGGGTTTCCTTTAGAAATGTCTATGGCTTTCGCTCCACTACACCCATCACAACCGGGACTAATTCAGCCAACTCTTCCTAGCATGGCCAACTCTTCTGATATCCTTCGGAGAACCGTTCATCCACAGTTGGCATCACCCGCTAGTGGAAGTTTCAAGGAGCCAAATCAGGTTCCTGATGTGTGGGAAGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCTACTACAACTGCTCCCATGAGTACCCAAGATGCGGATGGTACTGTGGCAGCAACTCAGATGAAGGTTGAACTTTGA 1611 0.4655 MSDKEKFELDRKEDPMNYSTGMASDRRFGGSNLLNSSVGLAGRGDLNGSSSCSSASLVDSFGPNFWDTPTNSQNLGFCGINVHNSGSSLNPIEIRKDGFGFGRGGHDHGTLEMGWNQGNGFIPNESAMFPQNLSRFPSDSGFIERATRFSCFGGGDFGDMVNAYGIPQSMGPYAGTGGEAIHQARDGGQPQESNPNEAEAVKDATPSVEYLATKASPLKNDKRSENHVMPQNEGQQGPSRPPNETDRAKSSDDGGVQDDSPMLDGVSDEPCLKGLDSKKRKRIGQDADNDKAVELPTEGAGDISESQQKGEQEPTPTNKASGKNAKQGTQVSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFDIEGLIPKDILHQRPGPSALGFPLEMSMAFAPLHPSQPGLIQPTLPSMANSSDILRRTVHPQLASPASGSFKEPNQVPDVWEDELHNVVQMSFATTTAPMSTQDADGTVAATQMKVEL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02190 536 MobiDBLite consensus disorder prediction 1 15 - -
Aip05g02190 536 MobiDBLite consensus disorder prediction 271 295 - -
Aip05g02190 536 MobiDBLite consensus disorder prediction 301 331 - -
Aip05g02190 536 Gene3D - 345 417 IPR036638 GO:0046983
Aip05g02190 536 Pfam Helix-loop-helix DNA-binding domain 351 399 IPR011598 GO:0046983
Aip05g02190 536 MobiDBLite consensus disorder prediction 1 23 - -
Aip05g02190 536 PANTHER BHLH TRANSCRIPTION FACTOR 37 535 - -
Aip05g02190 536 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 535 IPR024097 GO:0006355
Aip05g02190 536 MobiDBLite consensus disorder prediction 229 244 - -
Aip05g02190 536 SMART finulus 354 404 IPR011598 GO:0046983
Aip05g02190 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 416 IPR036638 GO:0046983
Aip05g02190 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983
Aip05g02190 536 MobiDBLite consensus disorder prediction 174 336 - -
Aip05g02190 536 CDD bHLH_AtBPE_like 338 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02190 Aip-Chr5 98139668 98144276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02190 48 535 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.539 8.75e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g02190 HLH 6.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02190 - - aip:107643749 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02190 05 98139668 98144276 Aip05g02190 05 98139668 98144276 ECH