LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g02190	ATGAGTGACAAAGAGAAGTTTGAGCTTGACAGAAAGGAGGATCCCATGAATTATTCCACCGGAATGGCCTCGGATCGGAGATTCGGAGGTTCCAATCTTCTGAATTCATCTGTGGGTTTGGCTGGCAGAGGGGATCTAAATGGTTCCTCTTCATGTTCCTCTGCTTCCCTAGTGGACTCCTTTGGCCCAAACTTCTGGGACACTCCGACGAATTCCCAGAACTTGGGGTTTTGTGGCATCAATGTTCACAACAGTGGGAGCTCTTTGAACCCAATTGAAATCAGAAAAGATGGGTTTGGATTTGGAAGAGGTGGTCATGATCATGGAACACTTGAAATGGGTTGGAATCAAGGTAATGGCTTTATACCAAATGAGTCTGCAATGTTCCCCCAGAACTTGTCTCGGTTTCCAAGTGATTCTGGATTTATTGAGCGTGCAACGAGATTCTCGTGCTTTGGTGGAGGGGATTTCGGAGATATGGTGAATGCTTATGGGATTCCTCAATCCATGGGCCCTTATGCTGGTACCGGTGGTGAGGCAATTCACCAAGCAAGAGATGGAGGACAACCTCAAGAGAGCAATCCGAATGAAGCTGAAGCTGTGAAAGATGCGACACCATCTGTCGAGTATCTTGCTACTAAAGCTAGCCCGCTCAAGAATGATAAAAGAAGTGAAAACCATGTAATGCCTCAAAATGAAGGGCAACAAGGTCCTTCTAGGCCTCCGAATGAGACTGACCGAGCCAAATCTAGCGATGATGGCGGTGTTCAAGATGACTCCCCAATGTTGGATGGTGTTAGCGACGAACCTTGTCTTAAAGGACTAGATTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCCGATAATGATAAAGCTGTTGAACTACCTACGGAAGGTGCAGGGGATATCTCTGAGAGCCAACAAAAGGGAGAGCAGGAACCTACTCCAACAAACAAGGCTTCTGGAAAGAATGCCAAACAAGGGACTCAAGTTTCAGATCCACCTAAGGAGGAATACATACATGTCAGGGCTCGGCGGGGTCAAGCAACTAATAGCCACAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTTACTGGCAAGGCTGTTATGCTCGATGAAATAATTAACTATGTACAGTCGCTTCAACGACAGGTTGAGTTCTTGTCCATGAAACTCGCAACTGTAAATCCGCGGCTGGATTTTGATATTGAAGGACTTATCCCTAAAGATATTCTTCACCAACGGCCGGGTCCTTCTGCATTGGGGTTTCCTTTAGAAATGTCTATGGCTTTCGCTCCACTACACCCATCACAACCGGGACTAATTCAGCCAACTCTTCCTAGCATGGCCAACTCTTCTGATATCCTTCGGAGAACCGTTCATCCACAGTTGGCATCACCCGCTAGTGGAAGTTTCAAGGAGCCAAATCAGGTTCCTGATGTGTGGGAAGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCTACTACAACTGCTCCCATGAGTACCCAAGATGCGGATGGTACTGTGGCAGCAACTCAGATGAAGGTTGAACTTTGA	1611	0.4655	MSDKEKFELDRKEDPMNYSTGMASDRRFGGSNLLNSSVGLAGRGDLNGSSSCSSASLVDSFGPNFWDTPTNSQNLGFCGINVHNSGSSLNPIEIRKDGFGFGRGGHDHGTLEMGWNQGNGFIPNESAMFPQNLSRFPSDSGFIERATRFSCFGGGDFGDMVNAYGIPQSMGPYAGTGGEAIHQARDGGQPQESNPNEAEAVKDATPSVEYLATKASPLKNDKRSENHVMPQNEGQQGPSRPPNETDRAKSSDDGGVQDDSPMLDGVSDEPCLKGLDSKKRKRIGQDADNDKAVELPTEGAGDISESQQKGEQEPTPTNKASGKNAKQGTQVSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFDIEGLIPKDILHQRPGPSALGFPLEMSMAFAPLHPSQPGLIQPTLPSMANSSDILRRTVHPQLASPASGSFKEPNQVPDVWEDELHNVVQMSFATTTAPMSTQDADGTVAATQMKVEL	536

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip05g02190	536	MobiDBLite	consensus disorder prediction	1	15	-	-
Aip05g02190	536	MobiDBLite	consensus disorder prediction	271	295	-	-
Aip05g02190	536	MobiDBLite	consensus disorder prediction	301	331	-	-
Aip05g02190	536	Gene3D	-	345	417	IPR036638	GO:0046983
Aip05g02190	536	Pfam	Helix-loop-helix DNA-binding domain	351	399	IPR011598	GO:0046983
Aip05g02190	536	MobiDBLite	consensus disorder prediction	1	23	-	-
Aip05g02190	536	PANTHER	BHLH TRANSCRIPTION FACTOR	37	535	-	-
Aip05g02190	536	PANTHER	STEROL REGULATORY ELEMENT-BINDING PROTEIN	37	535	IPR024097	GO:0006355
Aip05g02190	536	MobiDBLite	consensus disorder prediction	229	244	-	-
Aip05g02190	536	SMART	finulus	354	404	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g02190	Aip-Chr5	98139668	98144276	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip05g02190	48	535	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G68920	43.539	8.75e-105	321

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Aip05g02190		HLH	6.9e-06	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g02190	-		-	aip:107643749	1078.16

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip05g02190	05	98139668	98144276	Aip05g02190	05	98139668	98144276	ECH

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