Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02140 ATGGCAGAGGTATTTGATATGTTAATGGGTGTGAATGCAAGAAAACTCGAATGGAATTTTCAGGGTGGAAGGATCCAAGCCTCAATCCCTAAACCTCTACTAAAGAAATGGAGAGGTAAGATTGTTGAGTTCAAGATGTACATCATGACCCATTTCATTGTGGTCGACAAGAAGGAAAAAATCAAGACAACCAACAATAGATGGTCCTTAAGTTTTTCACATAGGACCACAGTTCAGCCAGTTTCTAAACCAAGTTATCCTCTTGAAGCATTTAGCTTTAAGCCCATTCCGGAGCTGCTTGCTGCTGACAAGCTGGAAGATTCAGTTCTAATCGGAAAAACGTCAATGCAGAGTCATTTTGATATATCAAAGTTACGTATTAACCCTGATTTGGATGAAGTCAAAGATTTCCGTAACAGGAGGCTTTCTGGAAAGCCGTCTAACTCGACCAGGATAAGTCAAGTTACATTGCATGGTCTGCGATCTAGTGCAGACGAAATAAAAAATGGAGATGTCGTGGTCAAAACAATAGAAGAAGCCCTGAGCTCTTCACAGGAAGGACCTATATGGATTGCTGGTACTATTGTTTCAATTAATGTTGGAAAGGATGATTGGTTCTATAAATCATGTCGAAAGTGTCCGAAGAAAGTAGAAACTCCAATTGGCAACAGATATGAGTGTGGCAAGTGTGGCCACACTCATGCAAGTGCATCACTTAGGTTTAAGGTTGAGGTATTAGTATATGATGGAACTGGGAGCATCATGTTGCTGATGTGGGATAGGGAGATGGCACAACTGTGTGGGAGGCAAGCTGAGCAGATAAAGGATGAGGAAAGTAGTGATGGAGAAGGTTATCCTCCTACATTGGATAGCATGATGGATAGGCGGTTACTCTTCAAAATAAATGTCAAAGCATCGAACATAAAACAGTATGACCATGTTTACACGGTCATGAAAATATGTGATGATGAAGATATTGTGGAGATGAATCACCCCAAACCAGTACAAAACAATGCTTCTGCTAATCTAATTGAGACCGGGTGCAGTGACTCAATTGGTATATCAGCGGTGGTGGTTAATATGCATAATGATACTGAATCTATGGTTTCTTTGAGTTTGTGTTATCAAGATGGTGTCGAAGACAGTGTCACAAGCCTGAAGTCCAAAACGCCTGCAAAAAGAGCTCCCGTGGGGCTAAAGCAGTCCGTGCATATTAATATTGACACCAAAGATGAGTTGGGTTTTTCGACAAACAAATTTAGCCGAAAGGCTGGAAAGAGGTAG 1284 0.4112 MAEVFDMLMGVNARKLEWNFQGGRIQASIPKPLLKKWRGKIVEFKMYIMTHFIVVDKKEKIKTTNNRWSLSFSHRTTVQPVSKPSYPLEAFSFKPIPELLAADKLEDSVLIGKTSMQSHFDISKLRINPDLDEVKDFRNRRLSGKPSNSTRISQVTLHGLRSSADEIKNGDVVVKTIEEALSSSQEGPIWIAGTIVSINVGKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHASASLRFKVEVLVYDGTGSIMLLMWDREMAQLCGRQAEQIKDEESSDGEGYPPTLDSMMDRRLLFKINVKASNIKQYDHVYTVMKICDDEDIVEMNHPKPVQNNASANLIETGCSDSIGISAVVVNMHNDTESMVSLSLCYQDGVEDSVTSLKSKTPAKRAPVGLKQSVHINIDTKDELGFSTNKFSRKAGKR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02140 427 CDD RPA1_DBD_C 174 320 IPR013955 -
Aip05g02140 427 Gene3D - 159 330 IPR012340 -
Aip05g02140 427 Pfam Replication factor-A C terminal domain 193 320 IPR013955 -
Aip05g02140 427 Gene3D - 19 83 IPR012340 -
Aip05g02140 427 Pfam Domain of unknown function DUF223 21 88 IPR003871 -
Aip05g02140 427 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A-LIKE 120 342 - -
Aip05g02140 427 SUPERFAMILY Nucleic acid-binding proteins 175 324 IPR012340 -
Aip05g02140 427 PANTHER REPLICATION FACTOR A 1, RFA1 120 342 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02140 Aip-Chr5 90886639 90889115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02140 123 283 Core DNA Replication Machinery Family AT5G08020 27.381 8.18e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02140 - - aip:107630584 430.639