Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02096 ATGAAGATGTTTCCTCCCTCCGACACCTTTTATTGGTACAAGAATGAAGACGTTTCCTCGTACCGAGGTGGCTTGAAGCTGTGGAACCATCATCATTATCAATACCAACCGGAACACGACCTCATACCTCAAGCAAGGCCTCTCTTCCACCAAGATCTTTATAGCTCCGCGGCTGCTGTAGGAGTGTGTCTAACCACCGTGTTCAAAGATCAGTCACTCGCCTTCCTGGTGACGACGTCGGCCGTGGGGAGCGGAGCAGCAAGTGGAGCAGGAAGTGGAGCAGGTGGGATTAGCTGCCAGGACTGCGAGAGCCAGGCGAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCATGGATTCGATTGCCAAATCCATGTGAAGAGCACTTGGGTACCCGCTTCCAAGCGCCGCGAGAGGCAACAGCAATTCGCCTCTATCCAACAATAA 459 0.5338 MKMFPPSDTFYWYKNEDVSSYRGGLKLWNHHHYQYQPEHDLIPQARPLFHQDLYSSAAAVGVCLTTVFKDQSLAFLVTTSAVGSGAASGAGSGAGGISCQDCESQAKKDCPHMRCRTCCKSHGFDCQIHVKSTWVPASKRRERQQQFASIQQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02096 152 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 4 152 - -
Aip05g02096 152 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 152 IPR007818 GO:0003700|GO:0006355
Aip05g02096 152 Pfam Domain of unknown function (DUF702) 96 151 - -
Aip05g02096 152 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 98 140 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02096 Aip-Chr5 84271456 84271914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02096 7 152 C2H2 Transcription Factor Family AT5G66350 46.753 3.19e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aip05g02096 DUF702 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02096 - - aip:107640703 302.753