Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02080 ATGGAACCTTGGAGTTATGTTACTGATGAGAAAGGATATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTGTGAGAAGTAGAAAGGCAATGACTGAATGGGACAACAAAGCCTCTTGTAACTTCGAGAGAGGCGGTTTGAATTCGGAAAGAGAGGTAGTTAGGAGCATGGAATTCGTAGACTTGGGGTTCCCGGATTTGTTCCGAAAGCCCTTTGAGCTAGATAGTAATTTGAGTAGAAGAGGGAATACCTCTGCTCAAGTTATTGACTTGGATTCTTTTCTTGGGGAAGAAGAATCCGAATCAAAGCATTTGAGTTCTTTAGGTGAATTGAAGGCTCACGATACGTCATTGATCGATCTGAAGCTAGGGAGAATAGCAGATTGTCAAGCTGCAAGCAATGATAAAGTTGGAAATGAAGGGTTCACTTTAATACCAATGCAACAACCAAGTCCGACCACACTGGCAAAAAGAGCTCGCACTTCATGCTCGCCGAATCAGACTCCTGTATGTCAAGTTTATGGTTGTGACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCACAAGGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTTAACGGTATTGAACAGAGATTTTGTCAGCAATGCAGCAGGTTCCATTTGTTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGCAGGCGTCTAGCAGGACACAACGAACGGCGAAGGAAACCTCAGTTTGATTATATGACTAGTAGGCAGCATAAGATACTTCATTCGCATCAAGGTGCAAGATATATGGAATCTTCCTTACAGAAGAGGCCACAATTTTCATTTCCAGACATATTTCGATGTGGCACCCTTTTCCCTGCAAAGTATGATAAAATCTCTCAGAATGGCAATGTCAAATTAGAAGAGGAATTTATTTTCAGCCCTCAATTCGCAGCACCGGTCGCGCATGGTCAGGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGATTCCGTCGTGCCACTCAGAAGAAAATCCTGTAGCCAGCTCCTTTAGTTTTCACAGCATCTCTGAAATGCCTTTGGATATAAGCAATGAGGGTAAATACGTTGTGGACGAGTCCTTTCCGTGCGAGATGAACCATAAAGAATTTATCAAGAGTGAATCGGCAATGCTTTCTGATGCCGGCCACCCTGATCATCGAGCCATTAGTGATGACATTTGTCAAGCATCAGACTTATTCAATGTCAAACAACATTGTTCGCCCTTGGAACATGGATCCACTGTGGACTTATTCCAGTTATCATCCAATCTTGAAAGGGTAGAGCAGAAGAGAAATTCTGTTTCGGTAAAGTGGGAAAATGAGGACTCTTGTTTCCCAGCATTGTAA 1398 0.4242 MEPWSYVTDEKGYLFSDEMDFSLDAFVRSRKAMTEWDNKASCNFERGGLNSEREVVRSMEFVDLGFPDLFRKPFELDSNLSRRGNTSAQVIDLDSFLGEEESESKHLSSLGELKAHDTSLIDLKLGRIADCQAASNDKVGNEGFTLIPMQQPSPTTLAKRARTSCSPNQTPVCQVYGCDMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSRQHKILHSHQGARYMESSLQKRPQFSFPDIFRCGTLFPAKYDKISQNGNVKLEEEFIFSPQFAAPVAHGQELSSRALSLLSAQSQIPSCHSEENPVASSFSFHSISEMPLDISNEGKYVVDESFPCEMNHKEFIKSESAMLSDAGHPDHRAISDDICQASDLFNVKQHCSPLEHGSTVDLFQLSSNLERVEQKRNSVSVKWENEDSCFPAL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02080 465 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 56 446 - -
Aip05g02080 465 Pfam SBP domain 173 246 IPR004333 GO:0003677
Aip05g02080 465 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 446 IPR044817 GO:0003677
Aip05g02080 465 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Aip05g02080 465 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
Aip05g02080 465 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02080 Aip-Chr5 81474315 81478097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02080 1 464 SBP-box Gene Family AT1G69170 33.740 6.63e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip05g02080 SBP 7.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02080 - - adu:107489502 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02080 05 81474315 81478097 Aip05g02080 05 81474315 81478097 ECH