Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02070 ATGAACCAGCAGGACGAGAAAGCCACCATGGATCTTGTTCCACCCTCTGAGCACCTCTGTTACGTTCGTTGCAACTTCTGCAACACTGTGCTTGCGGTTGGGATACCATGCAAGAGGCTGCTGGATACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCGTTTCTGAGCACCAGGCCCCCTCCACCTCCAGCCCCTTTCTCTCACACCCATCAAACCACCACCATTGATCACACCCTCACTCTCCAGCAGGGTTTCTATGGTGATTCGAAGAAGGGGCAAGGATCATCTTCATCGTCCTCACCAACTACATCAAACGAATCAGTCTCCCCTAAAGCAGCACCTTTTGTTGTCAAACCACCTGAGAAGAAGCACCGTCTTCCATCTGCATACAACCGTTTCATGAAAGAGGAGATTCAGCGCATCAAAGCAGCCAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCAGCCAAAAATTGGGCAAGGTTTATTCCAAATTCGCCTGCAAGCTCAGTTGCTGCAAGTAAAAACAATGAATGA 549 0.5009 MNQQDEKATMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPPPPAPFSHTHQTTTIDHTLTLQQGFYGDSKKGQGSSSSSSPTTSNESVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPASSVAASKNNE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02070 182 Pfam YABBY protein 15 166 IPR006780 GO:0007275
Aip05g02070 182 Gene3D High mobility group box domain 105 172 IPR036910 -
Aip05g02070 182 PANTHER PROTEIN YABBY 6-RELATED 8 181 IPR006780 GO:0007275
Aip05g02070 182 SUPERFAMILY HMG-box 111 164 IPR036910 -
Aip05g02070 182 MobiDBLite consensus disorder prediction 87 112 - -
Aip05g02070 182 PANTHER PROTEIN CRABS CLAW 8 181 - -
Aip05g02070 182 CDD HMGB-UBF_HMG-box 127 163 - -
Aip05g02070 182 MobiDBLite consensus disorder prediction 87 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02070 Aip-Chr5 79738437 79740379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02070 5 180 C2C2-YABBY Transcription Factor Family AT1G69180 61.453 1.24e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Aip05g02070 YABBY 1.4e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02070 K25796 - gmx:100819079 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02070 05 79738437 79740379 Aip05g02070 05 79738437 79740379 ECH