Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02059 ATGGTTTCTTGGTTAGCCAGAAACAGAAATGGTGTGAAGAATGTAAAGAATGAAAAGAAGACAATGAGTAGAGAAGAAGTAGAAGAGGAAGAAGAAAGAAGTGATACAAAGAGTTTGTGGACTTTGTTAAGGAAATTTCTGATTCCTTGCAAGTTTTATGGTGTCCTCATCAGAATAAATATTATCTCAGATTACAACAGCAACAACAATTACCAGCCACAATCTCAGACTCTAAGCAGAAGATCAGATGATGGTTACAATTGGAGAAAATATGGTCAGAAACAAGTGAAAGGTAGTGAGAATCCAAGAAGTTACTATAAATGCACATTCCCGAATTGCCCAACAAAGAAGAAATTTGAGAGATCCTTGGATAGACAAATCACAGAGATTGTTTATAAGGGTACTCATAATCACCCTAAGCCTCAGAATACTAGGAGAAACTCTTCATCTTCTTCTAATTCTGCTGCTTTTGCAATTGCTCCCTCCAATCAAATGAACAACTTTGAGAGGTGTAAATCAGGTGGAGATGATTATGATGACGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGGGAAAATGAGGGAATATCAGGAGGTGGAAGTAGAACAGTGAGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATAGATATCCTTGATGATGGCTATAGATGGAGGAAGTATGGCCAGAAAGTAGTTAAGGGCAATCCAAATCCAAGGTAA 729 0.38 MVSWLARNRNGVKNVKNEKKTMSREEVEEEEERSDTKSLWTLLRKFLIPCKFYGVLIRINIISDYNSNNNYQPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKFERSLDRQITEIVYKGTHNHPKPQNTRRNSSSSSNSAAFAIAPSNQMNNFERCKSGGDDYDDDEPDAKRWKIEGENEGISGGGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02059 242 Pfam WRKY DNA -binding domain 83 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 Pfam WRKY DNA -binding domain 222 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 SUPERFAMILY WRKY DNA-binding domain 81 141 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 SUPERFAMILY WRKY DNA-binding domain 213 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 MobiDBLite consensus disorder prediction 172 193 - -
Aip05g02059 242 Gene3D WRKY domain 67 142 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 Coils Coil 12 32 - -
Aip05g02059 242 Gene3D WRKY domain 208 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 ProSiteProfiles WRKY domain profile. 83 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 152 IPR044810 GO:0003700
Aip05g02059 242 MobiDBLite consensus disorder prediction 132 208 - -
Aip05g02059 242 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 162 242 IPR044810 GO:0003700
Aip05g02059 242 SMART WRKY_cls 82 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 MobiDBLite consensus disorder prediction 137 170 - -
Aip05g02059 242 ProSiteProfiles WRKY domain profile. 216 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g02059 242 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 162 242 - -
Aip05g02059 242 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 68 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02059 Aip-Chr5 74930524 74932223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02059 80 242 WRKY Transcription Factor Family AT2G38470 60.591 4.01e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip05g02059 WRKY 8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02059 K13424 - aip:107621821 324.709