Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02054 ATGGCTACATGGAAGGTTGCCCCTGCTCTGGCAGCTGGTTGTGCTGCGATATTGAAGCCTTCCGAATTGGCATCTGTGACATGTTTGGAGTTGGTTGACATATGCAAAGAATCTAAGATGAAACGCATTGGAATTGATACTGAAGCACTCAAAGAGCACTTTGGGAAGAAAATTATGGAGCTTGAGGAGGAAAAAAGAAAAAAATCTCAAGATGTTCATGGCCAAAAATTGAAAGCACTGGAAGCACAGATTTTAGACCTCAAGAAGAAACAAGAAAACCAGTACATCAAGGCTCAAAAGGTCCAATTGCAGTATAAAATGAAGCAAGAGGCAGAACAATTTCGACAATGGAAGGCTTCTCAAGAAAAGGAGTTACTTCAGCTGAAAAGATTTGCTTGGAGAGAACTGCAAATAGCTACAGACAACTTTAGTGAGAGAAATGTTTTAGGACAGGGAAGCTTTCGGAAGGTTTATAAAGGAGTTCTACCCGATGGCACAAAAATTGCTGTTAAAAGGTTAACCAGTTATGAAAAGGAGGCAGAATATATTCGCAAGCTCAGGAAACTTTTCGAGGTTGCCTATCGTCTTCATGAACTCAAACCTGGGGAGGCTGTTTTGGATTGGCCTACGAGAAAAAAAGTGGCTCTGGGAACAGCCCAAGGCCTAGAATATCTTCATGAGCAATGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTGGATGTGAAGGCAGCTAATGTCACTTCTGTAGCtatatGGACACTAAAAGATGCCAAAGGAGTCGCCATCTCTAAGGAATTGTTGAGGGACTCCAAACAAAATTCTTTCGACAGAAGAAATCATTTAGGTACTCCACATGGAGGTCATTTAAACTTCAATTTAACTAAAATAGAGAAGTTGCAAGCTCATCGTTATGTGGTTTTCAATCGCGAAGGTGTGAAACCATCTATCAATGCCTTTAGAGACCACATTAGGAGAACTTCAAAAGGAAGAAGACTCTCACCTGTAGAGATAGAAAAGAAAGTTAATAAAGACTTTGTTGATTGGTTTCAAGCATTGAGTGTGAATCCAGATAATTCATACGAAATGtcaactgatataaagtttcttgcacgaggcccaatgatgaatgcaaggagattttctgtttatgacatcaatggattaattcacacggCAGTGGTGGGAGTTCTTCTGATCCGAAAGAACGAGGATGTCGAAACTCTTAAGAAGCTTTGGGAGGAGACAACATTTTATGACAAACAATGGCAAGCAACTTGGCAGGAGGATGAGAACTCAAGTACTTCCAAAAAAGAGTAG 1335 0.3775 MATWKVAPALAAGCAAILKPSELASVTCLELVDICKESKMKRIGIDTEALKEHFGKKIMELEEEKRKKSQDVHGQKLKALEAQILDLKKKQENQYIKAQKVQLQYKMKQEAEQFRQWKASQEKELLQLKRFAWRELQIATDNFSERNVLGQGSFRKVYKGVLPDGTKIAVKRLTSYEKEAEYIRKLRKLFEVAYRLHELKPGEAVLDWPTRKKVALGTAQGLEYLHEQCNPKIIHRDVKAANVLLDVKAANVTSVAIWTLKDAKGVAISKELLRDSKQNSFDRRNHLGTPHGGHLNFNLTKIEKLQAHRYVVFNREGVKPSINAFRDHIRRTSKGRRLSPVEIEKKVNKDFVDWFQALSVNPDNSYEMSTDIKFLARGPMMNARRFSVYDINGLIHTAVVGVLLIRKNEDVETLKKLWEETTFYDKQWQATWQEDENSSTSKKE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02054 444 SUPERFAMILY ALDH-like 1 38 IPR016161 GO:0016491
Aip05g02054 444 Gene3D Transferase(Phosphotransferase) domain 1 195 282 - -
Aip05g02054 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Aip05g02054 444 SUPERFAMILY Protein kinase-like (PK-like) 126 247 IPR011009 -
Aip05g02054 444 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 58 IPR016162 GO:0016491
Aip05g02054 444 Coils Coil 51 97 - -
Aip05g02054 444 Pfam Aldehyde dehydrogenase family 1 38 IPR015590 GO:0016491
Aip05g02054 444 PANTHER EXPRESSED PROTEIN 124 181 - -
Aip05g02054 444 PANTHER EXPRESSED PROTEIN 191 249 - -
Aip05g02054 444 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 124 181 - -
Aip05g02054 444 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 191 249 - -
Aip05g02054 444 SMART serkin_6 143 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g02054 444 Gene3D Phosphorylase Kinase; domain 1 113 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02054 Aip-Chr5 74254944 74264628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02054 127 352 Receptor kinase-like Gene Family AT5G10290 40.217 5.25e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aip05g02054 Aldedh 3.4e-08 CL0099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02054 - - ahf:112750268 275.404