Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01987 ATGAATGAAGCAGGTTTCAAACTGGTTTATCAACGCAAGGGTTCGTCTATGGAAGCCAATGGTGGAGGAAATCACGGTGGAAGCGGGGTGAGCCTGGCGTTCCTTTCTCCTTCGGTAAGCAGTCATCATAGCTCGCTCTTCTATGCAACAACCATTGATGCTGCTATTCCTACTATTGTTGGAATGGCACCGAAAAACCAAGATGCCATTAATGCTGCTATTGTTGGAATGCTTGCAGATCCTAAAGAGGCAAGGGCTGGAATCAGAGATGTTCACTTTTTACCTTTCAATCCTGTTGACAAGAGAACTTCTCTGACTTACATTGATGCTGATGGAAACTGGCACCGTGCAAGCAAAGGCGCTCCGGAGCAGATCATGAACTTGTGTAATCTAAGGGATGATGCTAAGAAGAAGGTTTATGCCATTATTGACAAGTTCGCTGAAAGAGGCCTTCGTTCCCTAGCCATTTCAAGACAGGACAGCCCTGGAGCTCCATGGCAATTTGTTAGTTTGTTGTCACTATTTGATCCACCAAGGCATGACAGTACCGAAACCATTCGCAGGGCTCTTAATCTCGGTGTAAATGTCAAGATGATTACAGGTGATCAACTCGTCATTGCTAAGGAGACAGGCCGAAGACTTGGAATGGGAACAAATATGTACCCATCTGCTTCCCTTCTTGGCCAAGACAAAGATGCAAGTATCGCCGCACTTCCCGTCGAAGAGTTGATTGAGAAAGCTGATAAATTTGCCGGAGTCTTTCCAGTTTTGATGGGTCATCTTTCTTCAATTTTCAATGGTTTGGGAAAATCACTGGCAATTAAGAAAGGGAGGAATTCTGAAAGATGCAGCGGAAGAGAAGCGGCGGAAGCAATGGCGAAGGAAGCAAAAAAGAATGAGTTCTTGTTATGTAGCTCAGaagaagaagaagaagaagaagaagaagaagaagaaGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAATGCGAAGAAAAATGAAGAGGAATGCAAGGAAGAAAGAAAAGAAGAAGGAGAATGAGCAGGAGGAAGAACGTGGAATACAAACGTTgaagaagaactgtttctcattttgcgctattcaaagttga 1215 0.4082 MNEAGFKLVYQRKGSSMEANGGGNHGGSGVSLAFLSPSVSSHHSSLFYATTIDAAIPTIVGMAPKNQDAINAAIVGMLADPKEARAGIRDVHFLPFNPVDKRTSLTYIDADGNWHRASKGAPEQIMNLCNLRDDAKKKVYAIIDKFAERGLRSLAISRQDSPGAPWQFVSLLSLFDPPRHDSTETIRRALNLGVNVKMITGDQLVIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADKFAGVFPVLMGHLSSIFNGLGKSLAIKKGRNSERCSGREAAEAMAKEAKKNEFLLCSSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGGGMRRKMKRNARKKEKKKENEQEEERGIQTLKKNCFSFCAIQS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01987 404 PRINTS P-type cation-transporting ATPase superfamily signature 170 181 - -
Aip05g01987 404 PRINTS P-type cation-transporting ATPase superfamily signature 192 202 - -
Aip05g01987 404 Gene3D - 176 255 IPR023214 -
Aip05g01987 404 PANTHER PLASMA MEMBRANE ATPASE 65 256 - -
Aip05g01987 404 Coils Coil 364 395 - -
Aip05g01987 404 MobiDBLite consensus disorder prediction 305 359 - -
Aip05g01987 404 PRINTS H+-transporting ATPase (proton pump) signature 247 263 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip05g01987 404 PRINTS H+-transporting ATPase (proton pump) signature 139 157 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip05g01987 404 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 67 181 IPR023299 GO:0000166
Aip05g01987 404 Coils Coil 299 362 - -
Aip05g01987 404 PANTHER CALCIUM-TRANSPORTING ATPASE 65 256 - -
Aip05g01987 404 MobiDBLite consensus disorder prediction 375 391 - -
Aip05g01987 404 MobiDBLite consensus disorder prediction 298 404 - -
Aip05g01987 404 SUPERFAMILY HAD-like 168 220 IPR036412 -
Aip05g01987 404 Gene3D - 63 175 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01987 Aip-Chr5 67652274 67656920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01987 66 255 Primary Pumps ATPases AT2G24520 78.680 3.96e-113 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01987 K01535 - gmx:100806580 349.747