Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01970 ATGAGATCATGCCCCCCACCAACGTCAACTATTTCACACCATTCTCCTTATTCAATGGGAGTTTTCTACACAGACATGGGTTCTCTCTCTCTTCGCACGCTTTCATCATCAACAACTCTTTCTTCATCGCAAAAGAGAAGTAATTATTATACCAAGGAAATGCATAACCATAATAATGACAATGGAAGAGGAACAACTACTTCAAGCTTATTTCCATTTCATCATCAGTTTATGAGGGATTGCCGTTCTAGAAATTTTCAAGAACACCCCTGTAATAATAAAGATTCTGATTATGATTCCAGTGAGGATGGCAATGAAAAATTCCACAACCATGAAGAAGAAGCAGCAGCAGCAGCAACTAATAAGTTCAATGATGATGAAGAGAACCCTAATGAGGAGAAGTATTGCATGATGAGTAGTGGGAAAGAGGTAAATAGCAGTGAAAAGTCCAAAGTGTGTGCAAGAGGGCATTGGAGGCCTTCAGAAGATTCCAAGCTGAAGGAGCTTGTGGCTCTTCATGGCCCTCAGAACTGGAACCTCATTGCTCAGAATCTAGAAGGAAGATCAGGGAAGAGTTGTAGGTTGAGATGGTTCAACCAACTAGATCCAAGAATAAAGAAGAATCCATTCAGTGAAGAGGAGGAAGAGAGGCTAATGGAAGCACATAGAGTGTATGGCAAAAAATGGGCTATGATTGCAAGGCTTTTTCCTGGCAGAACAGATAATGCTATCAAGAACCACTGGCATGTTATCATGGCCAGATACTACAGGGAGCAAAAATCCTTTCCTTCAAGGACCAATAGGAAAATCAGAAGATATAATAATAATAACCGTCAGAGCCTTCTCTTCAGTAGAAATAACATCACCACCAGTACTACTAGTGGTTATTATGGTGGTCAGTTTATTAATGGTTCAGCAACTATTACTCACATGGCTACTGCTTGTTGGAGACAACAACAAGATAATAATAATGAAGAGGACCCTAATGGCTTCTATAATCAACAACAGTTTCCTTTTGATTATTGTTTCTTCTCTGCTGGTGCAACTAGCAATTATGATAGGTATTATTGGGATAATACTAATGACGACGGTGATGAATATCATAATCTTCGTCATACTCATCCCCAACAATATCTCTATCAAATGCAAATGCCAAAAGACCACAACTTTTACAGTTACTCATCGGGTTCCTCTTCAACAATTACAACAACACCCCATGTTTGTTTGGCCATGGAGCTATCATCGTCATCAACAACATCATCCTTTGCTCAAGACAGGAACAAGGTGCGGTCCAACATCATTGAGAAGCCATTCGAGACAAATAGAAAGGAATAG 1335 0.397 MRSCPPPTSTISHHSPYSMGVFYTDMGSLSLRTLSSSTTLSSSQKRSNYYTKEMHNHNNDNGRGTTTSSLFPFHHQFMRDCRSRNFQEHPCNNKDSDYDSSEDGNEKFHNHEEEAAAAATNKFNDDEENPNEEKYCMMSSGKEVNSSEKSKVCARGHWRPSEDSKLKELVALHGPQNWNLIAQNLEGRSGKSCRLRWFNQLDPRIKKNPFSEEEEERLMEAHRVYGKKWAMIARLFPGRTDNAIKNHWHVIMARYYREQKSFPSRTNRKIRRYNNNNRQSLLFSRNNITTSTTSGYYGGQFINGSATITHMATACWRQQQDNNNEEDPNGFYNQQQFPFDYCFFSAGATSNYDRYYWDNTNDDGDEYHNLRHTHPQQYLYQMQMPKDHNFYSYSSGSSSTITTTPHVCLAMELSSSSTTSSFAQDRNKVRSNIIEKPFETNRKE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01970 444 CDD SANT 218 249 IPR001005 -
Aip05g01970 444 CDD SANT 158 199 IPR001005 -
Aip05g01970 444 ProSiteProfiles Myb-like domain profile. 202 252 IPR001005 -
Aip05g01970 444 Gene3D - 208 261 - -
Aip05g01970 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 256 IPR017930 -
Aip05g01970 444 PANTHER MYB TRANSCRIPTION FACTOR 19 276 - -
Aip05g01970 444 SUPERFAMILY Homeodomain-like 155 248 IPR009057 -
Aip05g01970 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 201 IPR017930 -
Aip05g01970 444 Pfam Myb-like DNA-binding domain 207 250 IPR001005 -
Aip05g01970 444 Pfam Myb-like DNA-binding domain 155 201 IPR001005 -
Aip05g01970 444 ProSiteProfiles Myb-like domain profile. 155 201 IPR001005 -
Aip05g01970 444 SMART sant 206 254 IPR001005 -
Aip05g01970 444 SMART sant 154 203 IPR001005 -
Aip05g01970 444 PANTHER MYB PROTEIN-RELATED 19 276 - -
Aip05g01970 444 Gene3D - 155 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01970 Aip-Chr5 66029701 66036593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01970 147 261 MYB Transcription Factor Family AT1G69560 78.261 1.13e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g01970 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01970 K09422 - gmx:100789305 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01970 05 66029701 66036593 Aip05g01970 05 66029701 66036593 ECH