Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01938 ATGGGTCAAGAATTTTCTCATGAAGGGGTTAATAGCGAGCATACATCATATGATCAGTATGAGCAGGAGGAAGAAAAATATGAGGAAGTTGACGTGGATTATATGGATGAGGACGACACAAGTGTGGAACTAATGTTCGATTATCACGGCTTCGATGAAGGGTATAACATTGACTCACTTGAAGACATTGGGATGATTGAATTTTGGAACATCAGGGATGAAGATGTATGTCATTTTCACTTTTCTGATGTCGACATTGCATTTGAGTTCTACAATAGATATGCAAGGACAAGAGGCTTTAGTGCTCGGAAGAACAGGAGTAGGAAGAGTCGTGCGGGCGCACTTAAGTTGAAGAATTTTGTATGTCATCGTGAAGGATTTAGACTACAAAATAGTTACTGCATTGGAAACCTTAAGAGAAAACCTACACCCGAGACAAGGTGTGGCTGCAGTGCACTGATGGAGATTCGTGTAGATGCACCTAGTGGTCGTTGGTTTATTTCCTATTTTTTTGATGAACACAATCATCCGCTTCTGGATCCTCGGTTGACTGGATTGCTCCCTGGGCATAGATTCATGTCCGAGGCTGATATTGGCCACATGGTTAACATGAAAAAGGGTGGGATTAGTGTTGGGCAGATATATCGGGCATTAGCAAATCAGGCAGGTGGCTACGAGTATCTCTCTTTCACGCAAAGGGACATGTACAATAAAATAGCAAAGCAGAGGCGCCAATTACCCGGTGATGCATATGCAGCTTTGAAGTATCTAGAAGATCAAGCAACAAATGACCCTTCTCTCTATTTTAATCATCACATGGATGCCGATGGTACTTTGCGCAATTTATTCTGGTGTGATGGCCTTAGTAGGGTAGACTACTCATTATTTGGCGATGTGCTGGCTTTTGATGCTACCTATAAGAGGAATAAATATATGTGTCCACTGGTGGTATTTTCTGGTGTCAATCATCACAATCAAACAATTATCTTTGCTGCTGCTTTAATTTGCGATGAGGAAAAAGACACATATAGGTGGTTGCTACAACAACTGAAAGTGGCAATGAATGGGAAAGCACCTGTTTCGGTGATCACAGATGGTGATTTATCAATGAAGTTCGCCATTGAGAAAGAGTTTCCTAATGCACATCATAGATTATGTGCATGGCATCTGATTCGCAATGCAACAAGTAACATTGGCAAGCCCCAGTTTACCTCCATGTTTAAAAAGTGTATGCTAGGCGACTATGAAATTGATGTATTTCGTCAAAAGTGGTTTGAAATGGTTGAGGAATTTGGTGTCGAAAACAAGAATTGGGTCCTAGATATGTATAAAAAGAGACATTCATGGGCAACTGCACATATAAGAGGGAAGTTTTTTGCTGGTTTCCGGACTACTTCTCGGTGCGAGGGATTAAACTCGATCATTGCAAAGTATGTCAACTCAAGGTACAATCTGGTTGAGTTCATTCAACACTTTAATCGTTGTGTCGACCATATAAGGTGGAAAGAGGTCCAGGCTGACCTCGCCTCTGTGAATGGGAGACCCAGTTTGCAAACCTGTTTTCAACAGTTAGAGAGGAGTGCTGCCAATGTTTACACCCTATCAATATTTCATATGTTCCAACCAATCCTTGTACGGGCTGCATCAATGAAGGTAATAAATATGAGGCAAACTGGCTCTTATGTGATTTACTCTGTCGCTTTAGACCGAACGCCAAATGAGACGTGGCGTGTATTCTGTTGTGACATTGAGATGGAATTCAATTGTTCATGTATGAGAATGGAATCATTTGGCATACCTTGTGAACACATAATTTGTGTCTTGGTGCATGAAGATATAGAGGAGTTGCCAAGGTCATTAGTCTTGCCTCGGTGGACCAAGACTGCCAAAGTTAGTTTCCAAAATGCTCGAGGGCTTCATTGGGATTCTTTGATGCTAAGTCAATACGGTTGTTTGATGGATTGGTTTAGACAACTAGCTAACTTTGCTTGTCGAGATAACGAGAGATTTATCTTTATACGGGAAATGGCTATGAATTTGTTGAAACAATTTAAGGAGGAAGATGCTGCACAAAAAGAGTTGGTCAATGATGCAGATAGTGTAAGAGATGGTGTGCAAGTGGATAATTCTGGAGCTGGGCTCGCAACCAATGATCTCGGACATAGCATGCCAAGGGACCCAAGAAAATGTAGGACAAAAGGGGGGGCTTCACAGTTCAATAAAAGAAAACATCGATGTGGACAGTGTGGCATGGAGGGCCACAATCGAACAACTTGTCGTGTTCGTCGTGGCATCTCACAGTCAGAAGGCTGGGGAAATGACTCGGATGATCACATGAACATTGAAGATGACTCATTGGTATATGATGAGAATGCTTCGTACAGTAGCAACGAAGTGATGTTCTTCTTAGAGGCCATAAGAATGGACGAGAGGCTGTCAAGTACTTTGGACCAGCACCTGGTGTGCCCCATAGTCACACCAAGCCCTATGTTCGTTCAAAAGGACGGAAATTTGCGCGTGCTAGAGGAAGAAGGACTAGCAAAGGCTTCAGAGTTTTAG 2559 0.4228 MGQEFSHEGVNSEHTSYDQYEQEEEKYEEVDVDYMDEDDTSVELMFDYHGFDEGYNIDSLEDIGMIEFWNIRDEDVCHFHFSDVDIAFEFYNRYARTRGFSARKNRSRKSRAGALKLKNFVCHREGFRLQNSYCIGNLKRKPTPETRCGCSALMEIRVDAPSGRWFISYFFDEHNHPLLDPRLTGLLPGHRFMSEADIGHMVNMKKGGISVGQIYRALANQAGGYEYLSFTQRDMYNKIAKQRRQLPGDAYAALKYLEDQATNDPSLYFNHHMDADGTLRNLFWCDGLSRVDYSLFGDVLAFDATYKRNKYMCPLVVFSGVNHHNQTIIFAAALICDEEKDTYRWLLQQLKVAMNGKAPVSVITDGDLSMKFAIEKEFPNAHHRLCAWHLIRNATSNIGKPQFTSMFKKCMLGDYEIDVFRQKWFEMVEEFGVENKNWVLDMYKKRHSWATAHIRGKFFAGFRTTSRCEGLNSIIAKYVNSRYNLVEFIQHFNRCVDHIRWKEVQADLASVNGRPSLQTCFQQLERSAANVYTLSIFHMFQPILVRAASMKVINMRQTGSYVIYSVALDRTPNETWRVFCCDIEMEFNCSCMRMESFGIPCEHIICVLVHEDIEELPRSLVLPRWTKTAKVSFQNARGLHWDSLMLSQYGCLMDWFRQLANFACRDNERFIFIREMAMNLLKQFKEEDAAQKELVNDADSVRDGVQVDNSGAGLATNDLGHSMPRDPRKCRTKGGASQFNKRKHRCGQCGMEGHNRTTCRVRRGISQSEGWGNDSDDHMNIEDDSLVYDENASYSSNEVMFFLEAIRMDERLSSTLDQHLVCPIVTPSPMFVQKDGNLRVLEEEGLAKASEF 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01938 852 ProSiteProfiles Zinc finger SWIM-type profile. 564 612 IPR007527 GO:0008270
Aip05g01938 852 PANTHER OS02G0262500 PROTEIN 77 669 - -
Aip05g01938 852 MobiDBLite consensus disorder prediction 712 736 - -
Aip05g01938 852 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 669 IPR031052 GO:0006355
Aip05g01938 852 MobiDBLite consensus disorder prediction 1 16 - -
Aip05g01938 852 Pfam FAR1 DNA-binding domain 89 179 IPR004330 -
Aip05g01938 852 Pfam MULE transposase domain 299 393 IPR018289 -
Aip05g01938 852 SMART 26again6 587 614 IPR006564 GO:0008270
Aip05g01938 852 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01938 Aip-Chr5 61840652 61844120 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g01938 MULE 8.4e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01938 - - aip:110272016 1637.08