Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01933 ATGGAGGAAAGGAAGTTTGTATGCAAGTATTGCAGTAAGAAGTTTCCTTGTGGCAAGTCTCTTGGGGGTCACATAAGGACTCACATGATGAATGAACACTCTCTATCAGCAACAATGCCCTATGCTAATATCAATTCATCTTCTTCTTCTTTAATACTCGAGTTTGAATATCCTAACAGGAAGAGGAAGCACGATTTCTTGGCAACTAATGGTTCTAATTCCAGCTATGGCGGTAGTGGATATGGTTATGGACTCAGAGAGAATCCGAAGAAAACAAAGAGTTTTGTGGATGCCAATCACAACAAGTTATGTAAAGAATGTGGAAAAGGTTTTCCATCGCTTAAGGCTCTCTGTGGTCACATGGCTTGTCACTCAGAGAAAGAAAGAGGAACCAATTCCAATTCCAATAACAGGTTTCAGTTTGAATCCAATTCTGGGATTAGTGAGAAGCAGAAATTGCTTATGGATAGTCATTCTGATACTGAAACCTCTGTTCCAATTAGGAGATCCAAGAGGATGAGATTCAGGAACCTCTCCAAAAACAACCGCAAACCTTTTTGTTCTTCTTCTTCTTCTTCTGTGTCTGAGGTTGAGCAGGAGCAAGAAGAGGTTGCTAGGTGTTTGATGATGCTGTCCAAGGATAACACCTACAAGGGTCGATTCGTGCTTTTCGCTGAGTCGTCCGATAACAAGTCGATTGTTCTTGAGGGGAAATCGCCTTCTGTTGACACCTACAATAAGGTTATGGTTGTGGATCATGAGAAGAATCAACACAAGGGTGCTGAGATTGGTTATAATTCGGACAATTCGGATTCAGGCTATTTCAGATATGGTCCCAAGAAGAATGTAGATTCTGATGATGATGAAGTTAACAACAATGTTGATTCGAGGAGTGGTGTAAGAAGCAGAAACAATTCCTTGTTGAAGAAAATGGCAGCAGCCAACGATTCTTCGAGCAAGAAGAATAACAAACCAAATGGCATTACCGGTTTCGGTGACAAGCATTGGAAGGTTGAGTCTTTCACAACTGAAGATTTCTCTGCATTCGTAAGCGATGAGTTTAATAACAACAGCACAGACACTGATTCATACCCTGCAGCAGCTGCTAATGCATCAAAATCTCGCAGCAACAAGAAGATCGATGAGAACAACAAGGGTAAGACTAAGAAAAAGAGTAAGAAGAAGAAGAAGTTGAAGTCAAAGAAGAACAAGGAACATGAGTGTCCAATTTGCAACAAAATGTTTAGGTCAGGACAGGCATTGGGGGGTCACAAAAGATCACATTTTGTTGGAGGATCTGAAGAGAACACACTGGTCATTAGGCCAGCTCCTGCTACAGTTGCTCCATGCCTAATTGATCTCAATTTACCTGCTCCTGTTGATGATGCACCTTTTTGA 1398 0.4127 MEERKFVCKYCSKKFPCGKSLGGHIRTHMMNEHSLSATMPYANINSSSSSLILEFEYPNRKRKHDFLATNGSNSSYGGSGYGYGLRENPKKTKSFVDANHNKLCKECGKGFPSLKALCGHMACHSEKERGTNSNSNNRFQFESNSGISEKQKLLMDSHSDTETSVPIRRSKRMRFRNLSKNNRKPFCSSSSSSVSEVEQEQEEVARCLMMLSKDNTYKGRFVLFAESSDNKSIVLEGKSPSVDTYNKVMVVDHEKNQHKGAEIGYNSDNSDSGYFRYGPKKNVDSDDDEVNNNVDSRSGVRSRNNSLLKKMAAANDSSSKKNNKPNGITGFGDKHWKVESFTTEDFSAFVSDEFNNNSTDTDSYPAAAANASKSRSNKKIDENNKGKTKKKSKKKKKLKSKKNKEHECPICNKMFRSGQALGGHKRSHFVGGSEENTLVIRPAPATVAPCLIDLNLPAPVDDAPF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01933 465 SUPERFAMILY beta-beta-alpha zinc fingers 103 428 IPR036236 -
Aip05g01933 465 MobiDBLite consensus disorder prediction 357 405 - -
Aip05g01933 465 ProSitePatterns Zinc finger C2H2 type domain signature. 408 428 IPR013087 -
Aip05g01933 465 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Aip05g01933 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Aip05g01933 465 MobiDBLite consensus disorder prediction 280 294 - -
Aip05g01933 465 MobiDBLite consensus disorder prediction 357 374 - -
Aip05g01933 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 406 428 IPR013087 -
Aip05g01933 465 MobiDBLite consensus disorder prediction 257 333 - -
Aip05g01933 465 MobiDBLite consensus disorder prediction 295 326 - -
Aip05g01933 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Aip05g01933 465 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 462 - -
Aip05g01933 465 SMART c2h2final6 6 28 IPR013087 -
Aip05g01933 465 SMART c2h2final6 406 428 IPR013087 -
Aip05g01933 465 SMART c2h2final6 102 124 IPR013087 -
Aip05g01933 465 Pfam C2H2-type zinc finger 406 428 - -
Aip05g01933 465 Pfam C2H2-type zinc finger 104 126 - -
Aip05g01933 465 Pfam C2H2-type zinc finger 6 29 - -
Aip05g01933 465 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Aip05g01933 465 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Aip05g01933 465 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 462 - -
Aip05g01933 465 MobiDBLite consensus disorder prediction 388 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01933 Aip-Chr5 61804441 61805839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01933 1 462 C2H2 Transcription Factor Family AT1G26610 38.740 9.43e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g01933 zf-C2H2_6 1.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01933 - - adu:107489539 804.668