Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01912 ATGTGGTCTCGTCGCGATCCTGATGTGAGAAAAAGTGGCAGAGAGAATGTTTTTATTAAGAACTTAGATGAATCCATAAATAATGCAGGATTACATGATTTATTTCAAAAGTTTGGAAATATCTTATCCAGCTTTGGGAATTGCTTTGGTGCTTCAAATTGGTTTAGAGGGAGTGATGATAGTGATACTGCTGAGAAGCCACGGGAACGAGGTAATAGAATTGAGGTTGTGACTAATTGA 240 0.375 MWSRRDPDVRKSGRENVFIKNLDESINNAGLHDLFQKFGNILSSFGNCFGASNWFRGSDDSDTAEKPRERGNRIEVVTN 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01912 79 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 43 IPR000504 GO:0003723
Aip05g01912 79 MobiDBLite consensus disorder prediction 59 73 - -
Aip05g01912 79 PANTHER POLYADENYLATE-BINDING PROTEIN 1 45 - -
Aip05g01912 79 Gene3D - 4 77 IPR012677 -
Aip05g01912 79 MobiDBLite consensus disorder prediction 57 79 - -
Aip05g01912 79 PANTHER RNA BINDING PROTEIN 1 45 - -
Aip05g01912 79 SUPERFAMILY RNA-binding domain, RBD 2 44 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01912 Aip-Chr5 58281948 58282292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01912 1 43 Eukaryotic Initiation Factors Gene Family AT4G34110 65.116 1.87e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01912 K13126 - aip:110271131 159.844