Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01901 ATGGACTTAACCCCAATTGATGCAAGCACCACCCACACCCAAACCCAAACCCAAACCATAGAACACACAAACTCACAACAAACACAAACCCCACCACCACCAACAACGAACGGTTCCCTCAAACGCCACCACCCGCTCCCGGCCACCGCTATTGCCGCCGCACCACCACTCTCCATGGTAATTTCCTACAAGGAGTGCCTCAAGAACCATGCAGCCACCATCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCCTCCTCCTCCTCCAACCCCTCTGAGCCACGCTCCCTCACTTGCGCCGCATGTGGCTGCCACCGCAACTTCCACCGCCGCGACCCAGAATCCCTCCTCCCCCACCACCACCACCACCCCCCAAACTTCCTCAGCTTCTACCACCACTCATCATCGCCGCCTCTCCCCCAGCGTGGTGGACTCAGCCTCAGCACAAGCCCAAGCACTACAAGCCCAAGCCCAAGCCCATCAGCAAGTCCAATTTCAAGCCCATCATCACCACCACCCGCCCCACTCTCTCACCACTTTCCTCCTCCTCCTCCGTACTCCTCCTTCCACCACCATCACATGAATAATAATTCTCCATCTACCGTTGTTGTTCCCAACATGCTCTTATCCCTTGGAAATGCCGCATGCTCTTCCGGTTCTGGATTCAACCACCAGAAAGACTTGAACAGCTCGAAGAAGAGGCATAGGACCAAGTTCAGCAAGGAACAGAAGGAGAAGATGCTGAGATTCTCAGAGAAGCTTGGTTGGAGAATGCAGAGAGATGAAGATGGTTTGATTCAAGAGTTTTGCAACCAAATTGGGGTTTCTAGAGGGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCTTCTTCAGAAACAGGAACAACAACAACAACGATAATGCTTCTGCTGCTGAAAAGAATGGGAGTCTTAATGGTGTTCATAACGGTAACCATATCGATAACGATAATGATGATGATCATAATAATAATGATAATGGAAATGGTAATCAACACAGCAACAACACTAGTAGCAGCAACGATGACATTCAGAGAGATTATTAA 1074 0.5112 MDLTPIDASTTHTQTQTQTIEHTNSQQTQTPPPPTTNGSLKRHHPLPATAIAAAPPLSMVISYKECLKNHAATIGGHALDGCGEFMPSSSSNPSEPRSLTCAACGCHRNFHRRDPESLLPHHHHHPPNFLSFYHHSSSPPLPQRGGLSLSTSPSTTSPSPSPSASPISSPSSPPPAPLSHHFPPPPPYSSFHHHHMNNNSPSTVVVPNMLLSLGNAACSSGSGFNHQKDLNSSKKRHRTKFSKEQKEKMLRFSEKLGWRMQRDEDGLIQEFCNQIGVSRGVFKVWMHNNKNTFFRNRNNNNNDNASAAEKNGSLNGVHNGNHIDNDNDDDHNNNDNGNGNQHSNNTSSSNDDIQRDY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01901 357 MobiDBLite consensus disorder prediction 220 240 - -
Aip05g01901 357 MobiDBLite consensus disorder prediction 1 37 - -
Aip05g01901 357 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Aip05g01901 357 MobiDBLite consensus disorder prediction 1 43 - -
Aip05g01901 357 Gene3D - 218 293 - -
Aip05g01901 357 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 302 - -
Aip05g01901 357 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 41 302 - -
Aip05g01901 357 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 234 291 IPR006455 -
Aip05g01901 357 MobiDBLite consensus disorder prediction 336 351 - -
Aip05g01901 357 MobiDBLite consensus disorder prediction 159 190 - -
Aip05g01901 357 MobiDBLite consensus disorder prediction 295 321 - -
Aip05g01901 357 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Aip05g01901 357 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Aip05g01901 357 MobiDBLite consensus disorder prediction 295 357 - -
Aip05g01901 357 SUPERFAMILY Homeodomain-like 220 293 IPR009057 -
Aip05g01901 357 MobiDBLite consensus disorder prediction 134 195 - -
Aip05g01901 357 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01901 Aip-Chr5 56304864 56306130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01901 59 297 ZF-HD Transcription Factor Family AT1G69600 41.057 2.95e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip05g01901 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01901 - - ahf:112803563 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01901 05 56304864 56306130 Aip05g01901 05 56304864 56306130 ECH