Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01900 ATGGCGGAGTGCCGCATTTGCCAGGAGGAGGACAGTGTCTCCAATTTGGAAAGCCCCTGCGCCTGCAGCGGAAGTCTCAAGTATGCACACAGAAAGTGCGTCCAGCATTGGTGCAATGAGAAGGGAGACATAACTTGTGAGATATGCCATCAGCCTTATCAACCTGGTTATACTGCTCCACCACCACGCCCGCAGCCCGAAGAAACTACCATTGACATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCGCGATCCTCGACTATTGGCAATTGCAGAGGCTGAACGCCAATTTTTGGATGCGGAATATGATGAATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCTGCAGCTCTAATTTTAATGGCCCTCTTACTCTTGCGGCATGCACTTTCTGTCACTGATGGTGATGCTTCTGATGATGACCCATCCAATTTTTTCTCCCTTTTCTTGCTACGTGCTGCTGGATTTCTTTTACCTTGCTATATAATGGCTTGGGCAATTAGTATTCTGCAGCGTCGGCGACAGAGACAGGAAGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTCCTACAGTCTGGGCAGCACAGGGGGCTTCAATTTGCCATAGCCCCAGGACCACCACCCACTGTACAGCAGGAACAAGTGTGA 672 0.5045 MAECRICQEEDSVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPGPPPTVQQEQV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01900 223 SUPERFAMILY RING/U-box 3 54 - -
Aip05g01900 223 Pfam RING-variant domain 4 49 IPR011016 GO:0008270
Aip05g01900 223 Pfam Protein of unknown function (DUF3675) 55 174 IPR022143 -
Aip05g01900 223 ProSiteProfiles Zinc finger RING-CH-type profile. 1 56 IPR011016 GO:0008270
Aip05g01900 223 SMART ringv_2 3 50 IPR011016 GO:0008270
Aip05g01900 223 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 212 IPR033275 -
Aip05g01900 223 Coils Coil 92 112 - -
Aip05g01900 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 212 - -
Aip05g01900 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
Aip05g01900 223 CDD RING_CH-C4HC3_MARCH 4 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01900 Aip-Chr5 55592347 55595238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01900 3 49 C3H Transcription Factor Family AT2G37950 44.000 6.54e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01900 - - gmx:100812998 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01900 05 55592347 55595238 Aip05g01900 05 55592347 55595238 ECH