Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01886 ATGGCATCCGAGCCTGACGTTTTCGAAAGATTTGTTAGAAACAGAGATATGACTCTGTTTTTGCCTTTCTTCTTTGGCTTCTCTGATTCTCAATCTCGGGATTCTTCATCGCAAGACCAAGATAACGACGAAACGGGAGAAAGGACCACCGATGCTCCCAACCGAGAGAGGATCATACTAGTGAACCCCTTCACGCAAAGCATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCCGCAAAGCTGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCGAAGAAGGTGAAGCTGAAGTAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAGGAGATGCCATGTAAGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGCAGGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGGAAAAAGAGGGATAGTGAAGGAGAAGAAGAACAAGAAGGAGGAGAAAGAGAGAGGAGAAGAATCGGTAATGGTGAAGTTTGGGTTAGTTTTTCTTTTAACAGGGGTATTAGTAGGAGACATGACCACGATCAGAATCAGAATCAGAATCAAAATCAAGATTCTTCTGGTGATGGTGATGATGATCCTAATTTGGGTGATTATGCATCATCAACTGCTGGAGGTGATGCTGAAGCAGAAAATTAG 759 0.4559 MASEPDVFERFVRNRDMTLFLPFFFGFSDSQSRDSSSQDQDNDETGERTTDAPNRERIILVNPFTQSMVVIDGASSLEALFRDMAVNNSRKAGRPPATKESIDAMPSFVIEEGEAEVGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGMHGTCPVCRYEMPVEEKDEGKKRDSEGEEEQEGGERERRRIGNGEVWVSFSFNRGISRRHDHDQNQNQNQNQDSSGDGDDDPNLGDYASSTAGGDAEAEN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01886 252 SMART ring_2 120 160 IPR001841 -
Aip05g01886 252 MobiDBLite consensus disorder prediction 29 54 - -
Aip05g01886 252 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Aip05g01886 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 20 211 - -
Aip05g01886 252 MobiDBLite consensus disorder prediction 36 54 - -
Aip05g01886 252 SUPERFAMILY RING/U-box 104 166 - -
Aip05g01886 252 MobiDBLite consensus disorder prediction 207 252 - -
Aip05g01886 252 Pfam Ring finger domain 119 161 IPR001841 -
Aip05g01886 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
Aip05g01886 252 CDD RING-H2_PA-TM-RING 119 161 - -
Aip05g01886 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 20 211 - -
Aip05g01886 252 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01886 Aip-Chr5 54605993 54607190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01886 10 207 C3H Transcription Factor Family AT1G26800 52.525 3.47e-63 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01886 - - adu:107489464 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01886 05 54605993 54607190 Aip05g01886 05 54605993 54607190 ECH