Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01834 atggatgcattcttgtcttcttccatgtccaatatcacgaagtctacaggaaagATCAACACTTTCGTCGCCACTTTCCGCCGCCTCGTTGATTCTCTTGGAACCATTAAAGACACTCCCGACCACCGCCAGAAGCTGCACAACACGAGACAGAGGATATCGAGGCTGGTGAAGGATATTTCTGCTAAGCTCAAGTCATTGAGTGAATTTGATCGCCATGCTTCTGTTGCTAATAGATTAGTTCAACATCAACCAACCCAACACCCCACTTCGGAGGAATTGAGCATTGGGAAAATCAAGTTCAAAGCTTTCAATTTGGTTATCAAGTTCACTATTACAAGTTTGCGGTTATCTTGTTCATGGACAACTTTTGTCATAAGCCTATCAAAACCAAAGAGTAAGATGATTGAAAACAGTAATATTGAAGCAGTAGGGATGTCTGCTAGCACTCAACCATCTTCTCCACCGTCAAGTGTTCGTAAGAATCGGTCAGCTGTCTGGGATCATTTTGATGTAGAGAATGCTACCGGAAAGAAGGCTAAATGCAAATATTGTGGAGAGATGAATGGAGGAAAAGGGAGAGGTGTTCCTTGTGATTCAGACTGGCAGTATGCTGAGTCCATTGTACCATTTTTGCGAGTGTTCAGTGATGCCACTATATGTGTTTCTGGTACCTTATATGTTACCAGTGATATGTATATAAATGAAGTATTTGCAGTTGGACGATTTATTCGTCATTCTTGCGATTCTGTTGATTTTAGTACTATGTCAATGGTAGAAAGGATGAGGGTTAAGTATGAGAAGTATTGGGGCAATCCTGATTCGGTGAATATGTTGTTATTGATTGCTATTGTACTTAATCCAATGCAAAAGATTGAGTATGTCAATTATTTCTTGGATTACTTATTTGGAGAAGAAAAAGGAGGCGAATTGAAGTCAAAGTTGTCCAAGTGTATAAAGTTACTTTACCAGCAATACCAAAGTTCTGAGGAAGCAAGTGAACCTGATACGCAATATGTTCAAGCCAACAACATTAATACCAATCTTCATGGCATGGGCTTTTTTCTGCAAGCAACCGGTCGTAGAACAAAGACAAGATCTGAACTTGATAGATATTTACAAGAAGAGATACTCCCATAA 1140 0.3781 MDAFLSSSMSNITKSTGKINTFVATFRRLVDSLGTIKDTPDHRQKLHNTRQRISRLVKDISAKLKSLSEFDRHASVANRLVQHQPTQHPTSEELSIGKIKFKAFNLVIKFTITSLRLSCSWTTFVISLSKPKSKMIENSNIEAVGMSASTQPSSPPSSVRKNRSAVWDHFDVENATGKKAKCKYCGEMNGGKGRGVPCDSDWQYAESIVPFLRVFSDATICVSGTLYVTSDMYINEVFAVGRFIRHSCDSVDFSTMSMVERMRVKYEKYWGNPDSVNMLLLIAIVLNPMQKIEYVNYFLDYLFGEEKGGELKSKLSKCIKLLYQQYQSSEEASEPDTQYVQANNINTNLHGMGFFLQATGRRTKTRSELDRYLQEEILP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01834 379 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 196 379 - -
Aip05g01834 379 SUPERFAMILY t-snare proteins 9 70 IPR010989 GO:0016020|GO:0016192
Aip05g01834 379 Pfam Syntaxin-like protein 17 83 IPR006011 GO:0016020
Aip05g01834 379 SUPERFAMILY Ribonuclease H-like 194 377 IPR012337 -
Aip05g01834 379 PANTHER BED FINGER-RELATED 196 379 IPR045259 -
Aip05g01834 379 Gene3D - 2 96 - -
Aip05g01834 379 Pfam Domain of unknown function (DUF4413) 223 326 IPR025525 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01834 Aip-Chr5 43684263 43697602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01834 18 76 SNARE and Associated Proteins AT5G46860 61.017 2.60e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01834 - - aip:107640691 392.889