Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01827 ATGGTTGGTGGTGGTGGAAATGGAGAGAGACCGCCGTGGAAGGCGGCAAATAGCGGCGGCGGCGTGGAGGAGCAGCCACCACAGAGACCGAGCATCACTCTGCCCACACGTGGCGGTGGTGGTGGTAGTGGTGGTTCCATGGAGAGTCTTTTCGGCGGCGGTTTCAGCCCTGGTCCGATGACACTAATCTCAAGCTTCTTCGGCGGCGACGATGGCAATAAGTCGTTCTCTCAGCTGCTCGCCGGAGCCATGGCATCTCCAACGGCGGCGGCGGGGACCAGTGGCCTGATTGATTCTCCTTCTGCCTTGTTTTCATCTTCTCAGGTTCCCCTAGGACATCAGCAGGCATTATTAGCACAGGTCACTAGTCAAGGAACACAACTACACTCAAGTATGCAAGTCCAACCTCAAGATTCACTGCAAACAATGTCTGCTACTACGACATTCGCACAAGTTCACGCTGCAAACACTTCCAACAACAATACTAATCCACACATGGTAGAGCCTTCTTCTTCCTCGTTGAATGTTGATAAGCCTGCTGACGATGGCTACAATTGGAGGAAATATGGCCAAAAACAGGTGAAGGGTAGTGAGTTTCCTAGGAGTTACTACAAGTGCACTCATGCAAGTTGTCCTGTGAAGAAGAAAGTTGAGAGGTCATTAGATGGACACATTACTGCAATTATATATAAAGGAGAGCACAATCACCAGCGTCCGAATAGGCGCTCGAAAGATGCTGCCATGGCATCGAGTGAAGGCTCAAACATGCAAGGGAATGCTGATTATCATCATGATCATGGTACATGTGCTAATCACCCTAGAATGGATGCAGAATCTAGTCAGGCTACAGGTGAACACCTTTCAGGAACAAGTGATAGTGAGGAAGTAGGTGATCATGAAAATGAGGTGGATGACAAAATTGTTGAGCCTGATCCCAAGAGGAGAAATACAGAGGTGACACACTCAGATCCAGATTCTTCACATAGGACAGTCACAGAGCCAAGAATCATTGTGCAAACAACAAGCGAAGTTGATCTCTTAGACGATGGCTATAGATGGCGAAAGTATGGACAAAAAGTTGTCAAAGGCAATCCATATCCTAGGAGCTATTACAAATGTACAACACCAGGTTGTAATGTTAGGAAGCATGTTGAGAGAGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAGCATAACCATGATGTACCAGCAGCTAAGATTAATAGCCACACTATTGCCAACAATAGTTCATCACAGTTTAAATCACAAAATAGTAATATACCTCAGATGCATGGTTTTGGAAGCAAAGGTATTGGGGTCAATGAGCAACAGCAACAGCCTGTGGCGCGTCTAAGGCTGAAGGAAGAGCAGATAACATAG 1392 0.467 MVGGGGNGERPPWKAANSGGGVEEQPPQRPSITLPTRGGGGGSGGSMESLFGGGFSPGPMTLISSFFGGDDGNKSFSQLLAGAMASPTAAAGTSGLIDSPSALFSSSQVPLGHQQALLAQVTSQGTQLHSSMQVQPQDSLQTMSATTTFAQVHAANTSNNNTNPHMVEPSSSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHASCPVKKKVERSLDGHITAIIYKGEHNHQRPNRRSKDAAMASSEGSNMQGNADYHHDHGTCANHPRMDAESSQATGEHLSGTSDSEEVGDHENEVDDKIVEPDPKRRNTEVTHSDPDSSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKINSHTIANNSSSQFKSQNSNIPQMHGFGSKGIGVNEQQQQPVARLRLKEEQIT 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01827 463 SUPERFAMILY WRKY DNA-binding domain 339 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 MobiDBLite consensus disorder prediction 291 330 - -
Aip05g01827 463 Pfam WRKY DNA -binding domain 348 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 Pfam WRKY DNA -binding domain 181 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 MobiDBLite consensus disorder prediction 274 290 - -
Aip05g01827 463 MobiDBLite consensus disorder prediction 230 332 - -
Aip05g01827 463 MobiDBLite consensus disorder prediction 157 177 - -
Aip05g01827 463 Gene3D WRKY domain 168 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 Gene3D WRKY domain 332 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 ProSiteProfiles WRKY domain profile. 181 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 MobiDBLite consensus disorder prediction 443 463 - -
Aip05g01827 463 SUPERFAMILY WRKY DNA-binding domain 178 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 MobiDBLite consensus disorder prediction 1 53 - -
Aip05g01827 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 462 IPR044810 GO:0003700
Aip05g01827 463 MobiDBLite consensus disorder prediction 230 245 - -
Aip05g01827 463 ProSiteProfiles WRKY domain profile. 342 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 29 462 - -
Aip05g01827 463 SMART WRKY_cls 180 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g01827 463 SMART WRKY_cls 347 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01827 Aip-Chr5 43307695 43315426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01827 29 80 WRKY Transcription Factor Family AT2G03340 53.704 3.79e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip05g01827 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01827 - - aip:107643570 914.064