Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01819 ATGCCTCCTCCAATTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTAAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAAGTTCCTAACTCAATGGATATGATTTTTCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTTAAGAAACAGGTTCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTTAAATTGGTTTTCCTTCACCGAACCACTATTGTACCTGTTGATGAAGATGTTATTCCAAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTTGTTGATGTCATTGGTCTTTTAACTTCAGTGGGTGAAGAGAAAGAATATGCAAAAGAGGAGAAAATTATGAAAATGATTGTGCTCGAATTAACTTCAAAAGATGCGTTGTGCATTGTTTGGGAACTATGTTAA 546 0.3553 MPPPIDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMDMIFLDEHCEKIQATVKKQVLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTIVPVDEDVIPKTCFNMFPFSELLNMTQDYDFFVDVIGLLTSVGEEKEYAKEEKIMKMIVLELTSKDALCIVWELC 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01819 181 Gene3D - 114 180 IPR012340 -
Aip05g01819 181 PANTHER REPLICATION FACTOR A 1, RFA1 8 156 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip05g01819 181 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Aip05g01819 181 Pfam Domain of unknown function DUF223 44 132 IPR003871 -
Aip05g01819 181 CDD RPA1_DBD_A_like 19 107 - -
Aip05g01819 181 Gene3D - 4 112 IPR012340 -
Aip05g01819 181 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 8 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01819 Aip-Chr5 43013677 43014527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01819 2 148 Core DNA Replication Machinery Family AT5G45400 25.658 9.86e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01819 - - aip:110269522 318.546