Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01808 ATGGTGGATGAACAGAATGAATTCGAACAAGATTTCAGAGATGAATTTACTGAGAGAGTGTTTTTTTCTGAATCTGATATGTTAGAAGATATCCTTGAAGCCGCTTATGCGGTTGACTCCGTGCAAGACATTACAACTTTGAAATTTAGTGAGAATTTTGCAGAGGAAATTGGCAAATACCACTTTTCTACTTTGCAGCTTGCATTTGGTTTTTATATGAAGCAAGGATTCAGGATGGAGAAATATTACACGATGGAAAAAAGGAAGAAGGAGCCTAGATTGGAAACAAGAACCGGATGTGAAGCCCGAATGGATGTTAAATTTGTACCAGAAAGTGGAAGGTGGCATATCTTTTATTTCTCTGACGAACACAACAATGATCTATTGGATACACAATTCAGTGCTATGTTGCCTGCCCACAGAAAAATGTCAGAGGCAGATATTATGCAAATGATGAACATGCTAAAGTCAGGGATTAGCATCTCACAGATATTTGGTCATATGTGGGCTACTGCATATCTAAGAGGAAAATTCTTTACTGGCTTTAGAACTACATCAAGATGTGAAGGTTTACACTCAGTTGTGGGAAGGTATGTGGGGTCGCGGTATGATTTGACAAGTTTTGTAGAGCATTTTCAAAGGTGTGTTGCACACATGCGCTTTAAAGAATTTAATGCTGATTATGAATCTACACGTGGGGTGCCCGTCATGGAAACTTGTATAGAGCTGCTAGAGAGATATGCTGCTGAGTTATACACTCATGAGATATTTCTTTTCTTTCGGCCATTTCTCTCTAGAGCTGGATCAATGCGGGTGCTAAACATAGATAATACCGATGATTGCATAAAATACATTGTGTGTAAGCATGGGAGGCCCGATTTTATGTGGACCATTGATTTTCGTCAAGAAGAAATTATCTTCATGTGTACTTGTTTAAGAATGGAGTCATTTGGTATTCCCTGCGAACATATTGTGAAAGTTCTGGTTGACAGAGACATCTGTGAGATTCCCCGGTCATTGGTATTGGATAGATGGACAAAAAAGGTTAAATCAGCACTCAATGATCCAAGTGGGTTCACCAGGGATGCTATTGTTATTAGTTGTCAAAGTGCCTTGGTGGAATTTTCTAAACAATTGGCTGCTATTGCTGCTAAAGTACCAGAGAGATATGAAGAGACACGTGACATAATTATGAGATTGTACTCATCTTACAAGGCTGCAGACGAAGGCACTAATCAACCTCAGTCAGGTGTAGCTAGAAGTAGCAATCCGTATGTGCATCAAACCACTGGAGGCTCAGGACAACCATCTAAGAAGAAGAAGCGGCAACATTGTAGTGTTTGTCAAATGGAAGGACATAAGAAGACAACATGTCCTTGGCAAAAGGACATTGACAACAACGTTATAGAAAATGAAGCTAACGGTTCGGACGATGGCGACATGTGTACCGAAGCGACAGCTGAGTTAGATAGTGATAATTATCAACCTCCATAA 1494 0.3983 MVDEQNEFEQDFRDEFTERVFFSESDMLEDILEAAYAVDSVQDITTLKFSENFAEEIGKYHFSTLQLAFGFYMKQGFRMEKYYTMEKRKKEPRLETRTGCEARMDVKFVPESGRWHIFYFSDEHNNDLLDTQFSAMLPAHRKMSEADIMQMMNMLKSGISISQIFGHMWATAYLRGKFFTGFRTTSRCEGLHSVVGRYVGSRYDLTSFVEHFQRCVAHMRFKEFNADYESTRGVPVMETCIELLERYAAELYTHEIFLFFRPFLSRAGSMRVLNIDNTDDCIKYIVCKHGRPDFMWTIDFRQEEIIFMCTCLRMESFGIPCEHIVKVLVDRDICEIPRSLVLDRWTKKVKSALNDPSGFTRDAIVISCQSALVEFSKQLAAIAAKVPERYEETRDIIMRLYSSYKAADEGTNQPQSGVARSSNPYVHQTTGGSGQPSKKKKRQHCSVCQMEGHKKTTCPWQKDIDNNVIENEANGSDDGDMCTEATAELDSDNYQPP 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01808 497 MobiDBLite consensus disorder prediction 470 497 - -
Aip05g01808 497 Pfam FAR1 DNA-binding domain 73 129 IPR004330 -
Aip05g01808 497 Pfam SWIM zinc finger 309 328 IPR007527 GO:0008270
Aip05g01808 497 MobiDBLite consensus disorder prediction 408 436 - -
Aip05g01808 497 ProSiteProfiles Zinc finger SWIM-type profile. 294 332 IPR007527 GO:0008270
Aip05g01808 497 PANTHER OS01G0607050 PROTEIN 167 395 - -
Aip05g01808 497 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 167 395 IPR031052 GO:0006355
Aip05g01808 497 MobiDBLite consensus disorder prediction 408 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01808 Aip-Chr5 41297230 41298816 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g01808 FAR1 1.8e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01808 - - aip:107620889 643.269