Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01781 ATGGCTTTCTTACCAGCAAATTTCATGCTACAAACCCCTCACCACCATGATGATCACCACCACCAACAACATCATCCACCTTCCCTCAATTCAATCCTACCAACATGCTCACCCCATGATTATCATGGGGGAGCAGCAACATTTCTAGGGAAAAGATCCATGTCATTCTCGGGGATTGATCTTGGAGGAGGAGGAGGAGGAGGAGGAGTAGAAGAAGGTAACAACAATGGGGAGGAAGAATTATCAGATGATGGATCACAGATAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGGCACTTGAGAAGAGCTTTGAGTTAGGGAACAAGCTTGAACCTGAGAGAAAAATGCAGCTTGCAAGGTCCCTTGGCTTGCAACCAAGGCAAATTGCAATCTGGTTTCAGAATCGAAGAGCAAGGTGGAAGACTAAGCAGTTAGAGAGAGACTACGATCAACTCAAGCGTCAATTCGAAGCCGTCAAATCAGACAATGATGCACTTCACGCCCAGAACCAAAAACTTCAAGCTCAGATATTGGCACTGAAAAATAGAGAAGCAACAACAGAGTCAATAAACCTGAACAAAGACACAGAAGGATCATGCAGCAACAGAAGCGAGAACAGTTCAGAGATCAAGTTTGATATTTCGACAAGAACACCAACACCAACAACAACAACAACCACCACCACCATTGTTGATAGTCCTCTATCATCAAAACCATTCTTTCCATCTTCATCATCATCCACTAGGCCGCCACATCAGCTTTTTCAGATTTCAAGGCCCGAGATTCATCTTCATCAGTGTCATCAACAGAATAATAATAATAATAATCATGTGGTGGCTAAAGAAGAGAGTTTGAGCAGCATGTTTGTTGCCATGGATGATCAGTCTGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 936 0.4391 MAFLPANFMLQTPHHHDDHHHQQHHPPSLNSILPTCSPHDYHGGAATFLGKRSMSFSGIDLGGGGGGGGVEEGNNNGEEELSDDGSQIGEKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKTKQLERDYDQLKRQFEAVKSDNDALHAQNQKLQAQILALKNREATTESINLNKDTEGSCSNRSENSSEIKFDISTRTPTPTTTTTTTTIVDSPLSSKPFFPSSSSSTRPPHQLFQISRPEIHLHQCHQQNNNNNNHVVAKEESLSSMFVAMDDQSGFWPWLEQQHFN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01781 311 Gene3D - 83 153 - -
Aip05g01781 311 MobiDBLite consensus disorder prediction 196 253 - -
Aip05g01781 311 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Aip05g01781 311 MobiDBLite consensus disorder prediction 60 89 - -
Aip05g01781 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 311 - -
Aip05g01781 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 311 IPR045224 GO:0003700
Aip05g01781 311 CDD homeodomain 91 147 IPR001356 GO:0003677
Aip05g01781 311 Pfam Homeodomain 91 144 IPR001356 GO:0003677
Aip05g01781 311 MobiDBLite consensus disorder prediction 12 31 - -
Aip05g01781 311 Pfam Homeobox associated leucine zipper 146 186 IPR003106 GO:0006355|GO:0043565
Aip05g01781 311 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Aip05g01781 311 SMART HOX_1 89 150 IPR001356 GO:0003677
Aip05g01781 311 Coils Coil 138 186 - -
Aip05g01781 311 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Aip05g01781 311 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Aip05g01781 311 SUPERFAMILY Homeodomain-like 84 148 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01781 Aip-Chr5 37592212 37593904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01781 1 311 Homeobox Transcription Factor Family AT1G69780 58.280 3.08e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip05g01781 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01781 K09338 - gmx:100808033 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01781 05 37592212 37593904 Aip05g01781 05 37592212 37593904 ECH
Aip05g01781 05 37592212 37593904 Aip05g01717 05 33152376 33154984 PCT