Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01770 ATGGGTAACTGTTTAGATTCTTCTGCAAAAGTTGATGCAGCTCAGAGTTCTAGAGGCAATTCTGTTTCAGCAATCTCAAAAACTCCACCCTCTACCTTATCAATTCCATCACACAGCGAAAAAAGCAATGCTTCAACTCTTCCCACGCCAAGGTCCGAGGGTGAAATCTTGTCTTCGCCAAATCTTAAGGCCTTCACATTCAATGATCTCAAGAATGCCACCCGAAATTTTCGTCCGGACAGCCTTCTCGGGGAAGGTGGATTCGGCTATGTTTACAAAGGATGGATCGACCAACACACATTCGTGGCTTCCAAACCCGGATCAGGAATGGTTGTTGCTGTAAAGAAGCTTAAGCCTGAAAGTTTTCAGGGTCATAGGGAGTGGCTGACTGAGGTTAACTACCTTGGACAACTGCACCATCCTAATCTTGTTAAATTGATTGGGTACTGCTTGGAAGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCGAAAGGGAGCTTAGAGAATCATCTATTTAGAAGAGGACCACAACCACTGTCTTGGGCAGTGAGGATGAAGGTGGCCATTGGTGCTGCCAGAGGACTCACTTTTCTTCACAACGCCAAATCACAAGTCATATACCGTGATTTTAAAGCTTCTAACATCCTGCTGGATGCGGAGTTCAATGCTAAACTTTCTGATTTCGGCCTGGCCAAGGCAGGTCCAACCGGTGATAGAACTCATGTATCTACACAAGTCATGGGAACTCAAGGATACGCGGCACCTGAATATGTAGCAACTGGTCGGCTAACGGCGAAAAGTGATGTATATAGCTTTGGGGTTGTGATGTTGGAACTCTTGTCCGGGAGACGCGCTGTTGATAAAACAATATCTGGTATGGAGCAGAATCTGGTAGACTGGGCAAAACCATATTTGGGCGATAAAAGAAGGTTGTTTCGGATTATGGATACCAAATTGGAGGGACAATACCCGCAGAAGGCAGCCTTCATGGCTGCTACGCTTGCCCTTCAGTGCCTTAACAGTGAAGCCAAGGCAAGGCCTGCCATGACAGAGGTTTTAGCAACCCTTGAACAGATAGACTCCCCCAAAACTGCAGGCCGCCACTCCCACTCGGAACATCTGAGAGTCCACACTCCCGTGAGGAGGTCTCCGGCACGAAATCGGTCCCCTTTACATCTGACTCCTGCTGCATCTCCACTGCCATCTCACCGGCAATCTCTTCGAGTGCACTAA 1236 0.4773 MGNCLDSSAKVDAAQSSRGNSVSAISKTPPSTLSIPSHSEKSNASTLPTPRSEGEILSSPNLKAFTFNDLKNATRNFRPDSLLGEGGFGYVYKGWIDQHTFVASKPGSGMVVAVKKLKPESFQGHREWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWAVRMKVAIGAARGLTFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVMLELLSGRRAVDKTISGMEQNLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKAAFMAATLALQCLNSEAKARPAMTEVLATLEQIDSPKTAGRHSHSEHLRVHTPVRRSPARNRSPLHLTPAASPLPSHRQSLRVH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01770 411 MobiDBLite consensus disorder prediction 9 56 - -
Aip05g01770 411 MobiDBLite consensus disorder prediction 361 411 - -
Aip05g01770 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Aip05g01770 411 Pfam Protein tyrosine and serine/threonine kinase 81 356 IPR001245 GO:0004672|GO:0006468
Aip05g01770 411 SUPERFAMILY Protein kinase-like (PK-like) 49 357 IPR011009 -
Aip05g01770 411 PANTHER OS01G0588500 PROTEIN-RELATED 14 407 - -
Aip05g01770 411 CDD STKc_IRAK 83 360 - -
Aip05g01770 411 ProSitePatterns Protein kinases ATP-binding region signature. 83 116 IPR017441 GO:0005524
Aip05g01770 411 ProSiteProfiles Protein kinase domain profile. 77 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g01770 411 MobiDBLite consensus disorder prediction 1 56 - -
Aip05g01770 411 Gene3D Phosphorylase Kinase; domain 1 53 162 - -
Aip05g01770 411 MobiDBLite consensus disorder prediction 364 380 - -
Aip05g01770 411 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 14 407 - -
Aip05g01770 411 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01770 Aip-Chr5 36628280 36631096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01770 6 357 Glycoside Hydrolase AT3G07070 48.169 5.12e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip05g01770 PK_Tyr_Ser-Thr 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01770 - - gmx:100809778 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01770 05 36628280 36631096 Aip05g01770 05 36628280 36631096 ECH
Aip05g01770 05 36628280 36631096 Aip01g02078 01 112328576 112341081 PCT