Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01717 ATGGCGAGTGGCAAGCTTTATGGGGGTTCCAGCATGTCCCTTCTGCTCCAAAACGAGAGTAGACTTCCCTCTTCATCTCAAGTTCTTGACTCTCTTTGGCTTCACACCTCTGACCCTTCTTCTTTCCAAGGTTCAAAAAACATGGTTGTTGATTTTGAGAATGGAAGAGGAAGCAGCATAAGAGACAGAAGCTTCTTCCAACAAGGGCTAATAGAAAAAGAAGACAATAATAATAACGGGTGTGATGACGATTATGACCCTTCATGCTTCCAACAAACGGGTAGTAACGGTGGTAACAGCAAGAAACGGAGGCTAACGAGCGAGCAGGTTCAGTTCCTGGAACGAAGCTTCGAGATGGAGAACAAGCTCGAACCCGAAAGAAAAGTTCAGCTTGCGAAAGAGCTTGGGTTGCAGCCAAGGCAAGTGGCGATTTGGTTCCAAAACCGAAGGGCAAGGTTCAAGACGAAGCAGCTTGAGAAAGAGTATGGTGCACTGAAAGCTAGCTTTGACAAACTCAAAGGTGACTATGAAAGTCTTCTTCAACAGAATGACAAGTTAAAACAAGAGGTGAATGCTCTTAGGAACAAGTTGATTCCTAGAGATAAAGAGGATGAGAATTGTTCTTCAGATGAAAAATCATCTCCACAGGATGTTGATACAATCAATTCAAACCACAACAAGGAGGAGGATGAGCCTATTATGATGGAATTGATGATCTCAAATTCAACCTCAAATGAAAATGGATCTAAGATGCCATTGCCACACCCAATCATTTTGACATGCAAGCAAGAAGATGCAAATTCAGCAAAAAGTGATGTCCTCGACGATTCGGCCGATAGTCCACATTGTACTAATAATGGAAACCACCACCACCACCACCACCATTTCTCGTCGTTCATGGAGGAGGAGCCGGCTGATTCGGATGATTTCTCGCAGGATGACGATGATAACCTTAGCGAAAACCTATTGACTCTTCCTTGTTTGCCTAAGGTTGAAGATAATGATGCATGCTACCATGAACAAAATGAGAACACTTGTGGTTTTGGTTTTCCAGTAGAAGACCAAACCTTTTGTTTCTGGCCTTACTAA 1089 0.4316 MASGKLYGGSSMSLLLQNESRLPSSSQVLDSLWLHTSDPSSFQGSKNMVVDFENGRGSSIRDRSFFQQGLIEKEDNNNNGCDDDYDPSCFQQTGSNGGNSKKRRLTSEQVQFLERSFEMENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKEYGALKASFDKLKGDYESLLQQNDKLKQEVNALRNKLIPRDKEDENCSSDEKSSPQDVDTINSNHNKEEDEPIMMELMISNSTSNENGSKMPLPHPIILTCKQEDANSAKSDVLDDSADSPHCTNNGNHHHHHHHFSSFMEEEPADSDDFSQDDDDNLSENLLTLPCLPKVEDNDACYHEQNENTCGFGFPVEDQTFCFWPY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01717 362 Coils Coil 169 196 - -
Aip05g01717 362 MobiDBLite consensus disorder prediction 269 317 - -
Aip05g01717 362 SMART HOX_1 99 160 IPR001356 GO:0003677
Aip05g01717 362 Pfam Homeodomain 101 154 IPR001356 GO:0003677
Aip05g01717 362 MobiDBLite consensus disorder prediction 197 232 - -
Aip05g01717 362 Gene3D - 93 163 - -
Aip05g01717 362 MobiDBLite consensus disorder prediction 197 212 - -
Aip05g01717 362 SUPERFAMILY Homeodomain-like 87 158 IPR009057 -
Aip05g01717 362 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Aip05g01717 362 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 362 IPR045224 GO:0003700
Aip05g01717 362 PRINTS Lambda-repressor HTH signature 127 136 IPR000047 GO:0003677
Aip05g01717 362 PRINTS Lambda-repressor HTH signature 136 152 IPR000047 GO:0003677
Aip05g01717 362 CDD homeodomain 101 157 IPR001356 GO:0003677
Aip05g01717 362 Pfam Homeobox associated leucine zipper 156 197 IPR003106 GO:0006355|GO:0043565
Aip05g01717 362 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
Aip05g01717 362 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01717 Aip-Chr5 33152376 33154984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01717 101 230 Homeobox Transcription Factor Family AT3G01470 56.818 3.53e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip05g01717 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01717 - K09338 adu:107489132 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01717 05 33152376 33154984 Aip05g01717 05 33152376 33154984 ECH
Aip05g01781 05 37592212 37593904 Aip05g01717 05 33152376 33154984 PCT
Aip05g01717 05 33152376 33154984 Aip05g01717 05 33152376 33154984 PCT