Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01716 ATGGACCTGCTCGTATTGACTTCTAAATGTATCGACTTCAGGACAATTCAACAAGATATACTTAAAGGGAGAGAAATCAACCTGTTTCAGGCCTCTAAGAGCCTTGGTTCATCTGAACAAATATTTTCAGGTGCATTTCCTAAGAACTATAAACCTCTTGCTAATTTCTACTATGAAGTAAATGATGATTCTCCAATTATACAGGATGATGTCAATTTGTTTGACTACAATGTCCCTGAACGTGTAAATGAGTTTGTCGCAGCAGCGATATCTCAGGCCAAGATCAAAGATAGTGAGAGTGCAGAGAAGCTGAAAATAGAGATACCTGAGGAACATGCAGATCCAGAGGCAGAAGTAATATCTCTATCACCAAAGTCGCCAATGGCGACGAACCGTTTCGTGTGTGAGATATGCGAGAAAGGGTTCCAGAGGGACCAGAACCAGCAGTTGCACTGGCGAGGGCACAACCTGCCGTGGAAGCTTCGGCAGACGGAGAAGGAGGTGGTGGTGGTGGTAGACGTGGGTTGA 528 0.4451 MDLLVLTSKCIDFRTIQQDILKGREINLFQASKSLGSSEQIFSGAFPKNYKPLANFYYEVNDDSPIIQDDVNLFDYNVPERVNEFVAAAISQAKIKDSESAEKLKIEIPEEHADPEAEVISLSPKSPMATNRFVCEICEKGFQRDQNQQLHWRGHNLPWKLRQTEKEVVVVVDVG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01716 175 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Aip05g01716 175 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 90 169 - -
Aip05g01716 175 Gene3D Glycoside hydrolase 38, N terminal domain 14 102 IPR027291 -
Aip05g01716 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 155 IPR013087 -
Aip05g01716 175 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 90 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01716 Aip-Chr5 33122360 33126263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01716 114 168 IDZ Gene Family AT5G66730 82.143 5.40e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g01716 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01716 K01191 - gmx:100798150 118.627