Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01638 ATGGATCTTTATTTGTATGAACTTTTGACAATTGAGCTTTCAGTCTTATTGAGAAATCAAATTTTGAGGTTTCATGCTCCAAAGAATGTAACAAGAAAAAGGGGAGGGCTGGTGTTAGTCAGGGCCTGCTATGGTGTTTTGAGGTTTGTTATGGAAAATGGCGCCAAGGGATGCGAGGTCATCGTTAGTGGAAAGTTGAGGGCTCAGCGCGCTAAATCCATGAAGTTCAAGAATGGGTACATGATTTCCTCAGAGCAACCAGTCAAGGACTACATTGATTCTGCTGTAAGACATGTACTCCTTAGGGATTTGGATAAGAAATGTTGCAGATGA 333 0.4144 MDLYLYELLTIELSVLLRNQILRFHAPKNVTRKRGGLVLVRACYGVLRFVMENGAKGCEVIVSGKLRAQRAKSMKFKNGYMISSEQPVKDYIDSAVRHVLLRDLDKKCCR 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01638 110 Pfam Ribosomal protein S3, C-terminal domain 41 101 IPR001351 GO:0003735|GO:0006412
Aip05g01638 110 SUPERFAMILY Ribosomal protein S3 C-terminal domain 35 101 IPR036419 -
Aip05g01638 110 Gene3D - 16 103 IPR036419 -
Aip05g01638 110 PANTHER BNAC06G00510D PROTEIN 32 103 - -
Aip05g01638 110 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 32 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01638 Aip-Chr5 29830863 29831879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01638 35 102 Cytoplasmic Ribosomal Protein Gene Family AT3G53870 85.294 6.84e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01638 K02985 - jre:108981607 125.561