Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01631 ATGAAGAGGTCTAGGGACGATATTTTCGCGAGTCCTCAACTTAAACGGCCTATAGTGTCTTCTCGAGAAGAAGCGTCCGGGCAACCCCAGATGATGAATGGAGGTGCTGTTGCTCAGAAGCTGACTACAAATGATGCATTGGCATATCTCAAGGCAGTAAAGGATATATTTCAGGATAAGAGGGACAAGTATGATGACTTTTTGGAAGTCATGAAAGATTTTAAGGCTCAAAGAGTTGATACTGCAGGCGTGATAGCAAGGGTTAAACAGCTCTTTAAAGGGCACAGAGACTTGCTTTTGGGATTCAACACCTTCTTGCCAAGGGGTTATGAAATCACACTTCCACTGGAGGATGAACAACCTGCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCGATTAATTTTGTGAACAAAATTAAGACCCGGTTTCAAGGTGATGATCGTGTTTACAAGTCATTTCTGGACATATTAAATATGTACAGAAAGGAAAGCAAGTCTATAACAGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGAGCATCCGGATCTTCTTGATGAGTTTACTCATTTTCTCCCGGACACTTCCTCAGCAGCCTCTGCTCATTATATTTCTGCTAGAAATTCTATGCTACGTGATAGGAGCTCTGCAATGCCAACTGTACGGCAAATGCATGTTGAGAAGAGAGAAAGGACTATGACCTCACATGGTGATCGTGACCTCAGTGTTGACCGTCCCGACCCTGATAATGACAGAGGTTTGATGAGGGCAGAAAAGGATCAGAGGAGACGTCTAGAGAAGGATAAGGAACGCAGAGAGGATAGGAGAGAACGTGACAGAGACGATAGAGATTATGAGCATGATGGTGGTCGAGATAGGGAAAGGTTCTCCCATAAACGGAAATCTGATCGTAGGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGATGAAAATATTGGCATGTATAGCCAGGAGCTTGCTTTCTGTGAAAAGGTCAAAGAGAAATTACGAAATCCTGATGACTACCAAGAATTTTTGAAGTGTTTGCATATTTACAGCAGGGAAATAATTACCAGACATGAATTGCAGTCATTGGTTGGTGATTTACTGGGGAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTAATACAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTATGGAGTGACGGACAAAGGCCAAAATCTGTGAAGGTTGAAGACAGGGATCGTGATCGAGACCGTTGTAGGGATGATGGCATGAAAGAAAGGGATCGTGAATTCCGAGAAAGGGACAAATCCACTGCCCCCGCCAACAAGGATGTTTCAGGTCCTAAGATATCCATATATCCCAGCAAGGATAAGTATTTGTCAAAGCCTATAAATGAGCTGGACCTTTCTAACTGTGATCAATGCACTCCGAGCTATCGTCTCTTGCCAAAAAATTACCCAATACCTGTAGCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTAAATGATCACTGGGTGTCTGTTACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGGAAAAATCAGTATGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAACTTGATATGTTGCTAGAGTCTGTAAATGCAACTACTAAGCGAGTGGAAGAGCTGTTAGAAAAGGTCAATAATAATATAATCAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCCTTAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTAGATGTGATGGATGTGTTACGGAAAAATGCATCTCTGGCTTTGCCAGTGATATTAACCCGCTTGAAGCAGAAACAAGATGAATGGGCAAGGTGTCGTGCTGATTTTAATAAAGTCTGGGCTGAAATATATGCCAAAAATTATCATAAATCTCTTGATCACCGTAGCTTCTACTTTAAACAACAGGATACAAAAAGCTTGAGTACTAAAGCATTACTGGCCGAAATCAAAGAAATCAGTGAGAAGAAACGCAAAGAAGATGATGTTCTTCTTGCGATTGCTGCTGGAAATAGACGTCCTGTTCTTCCAAACCTTGAGTTTGAGTACACTGATTCTGATATTCATGAAGATCTGTATCAGCTTGTAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAATTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTGTGTGTTCCTTCTCGGCCTCTGGGTGCCGAGGATACAGAAGATGTTGTCAAGGATAAGAATAATTCTGCCAAAAGTGGCACTGCAAGTGTTGCCGAGAGTGAGGGTAGTGCTGGTGCTGGTGCTGGTGCTATTGTAGTGAATCCTAAGCATATTAACACTTCTAGAAATGGGGATGAGTGCATGCCATTAGATCAATCAAATTCTAGCAAAGTATGGCAATCAAATGGTGACAGTGGTGCCAAAGATGATAAATGTCTTGATCCAGACCGCACTCTGCATAAAACTGAAACTTCAGGCACTAATACACAGCATGGTAAAATTAATACTAATTCATTCACACCTGATGAAATGTCAGGAGTCAATAAGCAAGACCACTCCAGTGAGCGGTTGGTGAATGCTAATGTTTCCCCAGCATTAGGAGTGGAGCTAAGTAATGGAAGAACAAGCATGGATAATGCATCAGGAATCATTGCCACTAATCCGTCTAGACCTGGTAATATATCTGGCGAAGGTGGAGTTGATTTACCTTCATCAGAGGGTGGTGATTCTACCAGACCAGGTACATCCACAAATGGGACCATCACAGAAGGGACCGAAGTTCACAGGTACCCAGAAGAATCAGTTCGGCAGTTAAAAAGTGAAAGAGAAGAGGGCGAGTTGTCCCCAAATGGAGACTTTGAAGAGGATAACTTTGCTGTTTATGGAGATACTGGTTTGGATGCAGTCCATAAGGGGAAGGATGGCGGTTCGAGTCAGCAATACCAAAACAGAAATGGAGAACAAGCTTTAGGTGAAGTTAGAGGAGAGAATGATGTTGATGCTGACGATGAAGGTGAGGAAAGTCCACACAGGTCATCTGAGGACAGTGAGAATGCTTCTGAGAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAATCTCGAGAAGAGCACGAGGATGGGGAAAATGATAACAAAGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCCATGATGTTGAAGGAGATGGAACCTCCTTGCCATTTTCAGAGCGCTTCCTATTAACTGTAAAGCCGCTGGCGAAGCATGTTCCCCCAGCGTTACATGGGAAAGAAAGGACTTCTCGAATTTTTTATGGAAATGATTCCTTTTACGTCCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGAAAGGAAATGGGGGGCTTCAAATAATACGGGTTCTACTGATCAATACAACAGGTTCATGAATGCGCTCTACAATTTGCTGGATGGTTCATCTGATAATACAAAATTCGAGGATGATTGTCGAGCCATTATTGGAACTCAGTCATATCTCTTATTCACTTTAGACAAGCTGATTTATAAGCTTGTTAAACAGCTTCAAAATGTTGCCACTGATGAGATGGATAACAAGCTTCTCCAATTATATGCATATGAGAAATCAAGAAAACCAGGAAGATTTGTTGACGCAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGAAGAGAACATATACCGAATTGAATATTCACCTGGACCTAAGAAATTGTCTCTTCAACTGATGGACTATGGACATGATAAGCCTGAAGTAACTGCCGTGTCAATGGACCCCAACTTTTCAGGCTATTTGTACAACGAATTTTTTTCTGTTGTCTCTGAAAAAAAGGAAAAGTCTGGAATTTTCTTGAGAAGGAACAAACGTAGATATGCCTGTGCTGATGACATTTCAAGTGAGGCTGTGGAAGGACTACAAGTTATTAATGGTCTTGAGTGTAAGATATCTTGCAGTTCATCCAAGGTGTCATATGTTTTAGATACGGAAGATTTTTTGTTCCGGAAGAGAAAGAATAGGGCGAAGTCTTTAACCATTAGTTCAAGAAGAGTACAACGGTTCCACAAATTGTTTTCCCTTACATGCTGA 4209 0.4151 MKRSRDDIFASPQLKRPIVSSREEASGQPQMMNGGAVAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRVDTAGVIARVKQLFKGHRDLLLGFNTFLPRGYEITLPLEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDRVYKSFLDILNMYRKESKSITEVYQEVAALFQEHPDLLDEFTHFLPDTSSAASAHYISARNSMLRDRSSAMPTVRQMHVEKRERTMTSHGDRDLSVDRPDPDNDRGLMRAEKDQRRRLEKDKERREDRRERDRDDRDYEHDGGRDRERFSHKRKSDRRAEDSGAEPLLDDENIGMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLIQSEKNDGGFLAGVMNKKSLWSDGQRPKSVKVEDRDRDRDRCRDDGMKERDREFRERDKSTAPANKDVSGPKISIYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKVNNNIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPVLPNLEFEYTDSDIHEDLYQLVKYSCGEMCTTEQLDKVMKVWTTFLEPMLCVPSRPLGAEDTEDVVKDKNNSAKSGTASVAESEGSAGAGAGAIVVNPKHINTSRNGDECMPLDQSNSSKVWQSNGDSGAKDDKCLDPDRTLHKTETSGTNTQHGKINTNSFTPDEMSGVNKQDHSSERLVNANVSPALGVELSNGRTSMDNASGIIATNPSRPGNISGEGGVDLPSSEGGDSTRPGTSTNGTITEGTEVHRYPEESVRQLKSEREEGELSPNGDFEEDNFAVYGDTGLDAVHKGKDGGSSQQYQNRNGEQALGEVRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEESREEHEDGENDNKAESEGEAEGMADAHDVEGDGTSLPFSERFLLTVKPLAKHVPPALHGKERTSRIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWGASNNTGSTDQYNRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQNVATDEMDNKLLQLYAYEKSRKPGRFVDAVYHENARVLLHEENIYRIEYSPGPKKLSLQLMDYGHDKPEVTAVSMDPNFSGYLYNEFFSVVSEKKEKSGIFLRRNKRRYACADDISSEAVEGLQVINGLECKISCSSSKVSYVLDTEDFLFRKRKNRAKSLTISSRRVQRFHKLFSLTC 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01631 1402 MobiDBLite consensus disorder prediction 933 949 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 908 1094 - -
Aip05g01631 1402 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Aip05g01631 1402 PANTHER SIN3B-RELATED 1 1391 IPR039774 GO:0003714
Aip05g01631 1402 Gene3D Paired amphipathic helix 124 196 IPR036600 GO:0006355
Aip05g01631 1402 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355
Aip05g01631 1402 Pfam Paired amphipathic helix repeat 149 192 IPR003822 GO:0006355
Aip05g01631 1402 Pfam Paired amphipathic helix repeat 341 385 IPR003822 GO:0006355
Aip05g01631 1402 ProSiteProfiles PAH domain profile. 316 388 IPR003822 GO:0006355
Aip05g01631 1402 SUPERFAMILY PAH2 domain 323 385 IPR036600 GO:0006355
Aip05g01631 1402 MobiDBLite consensus disorder prediction 1066 1088 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 412 448 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 847 879 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 223 312 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 1 30 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 407 458 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 212 318 - -
Aip05g01631 1402 Pfam C-terminal domain of Sin3a protein 1127 1373 IPR031693 -
Aip05g01631 1402 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Aip05g01631 1402 MobiDBLite consensus disorder prediction 832 846 - -
Aip05g01631 1402 SMART hdac_interact2seq4b 479 579 IPR013194 -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 805 879 - -
Aip05g01631 1402 Pfam Sin3 family co-repressor 482 572 IPR013194 -
Aip05g01631 1402 Gene3D Paired amphipathic helix 321 389 IPR036600 GO:0006355
Aip05g01631 1402 Coils Coil 548 572 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 951 972 - -
Aip05g01631 1402 MobiDBLite consensus disorder prediction 805 828 - -
Aip05g01631 1402 Coils Coil 255 282 - -
Aip05g01631 1402 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Aip05g01631 1402 MobiDBLite consensus disorder prediction 1029 1043 - -
Aip05g01631 1402 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1391 - -
Aip05g01631 1402 SUPERFAMILY PAH2 domain 123 194 IPR036600 GO:0006355
Aip05g01631 1402 SUPERFAMILY PAH2 domain 36 108 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01631 Aip-Chr5 29444797 29457226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01631 28 144 WRKY Transcription Factor Family AT4G12020 50.427 9.16e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip05g01631 Sin3a_C 4.5e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01631 K11644 - gmx:100811928 2209.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01631 05 29444797 29457226 Aip05g01631 05 29444797 29457226 ECH