Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01605 ATGAGACATGAGAGTGAGAGAGATGAGGGTTTCGCGCGCATTGACTTGTGGTTGTGGTTGACTTGGTCATTATTATTCCAGGGTGATACTATGGTTGCCTTCAACATGgttcttcgccgctgccgTAATAGTTTCTTGGACAAGAATAATAATAATGGTGAAAAGCCTGCTTCTTTTGCAAAGACTCTAACACAATCCGATGCCAACAATGGCGGCGGTTTCTCTGTGCCTCGTTACTGTGCCGTAACCATTTTTCCAAGGCTTGATTACTCCACAGAGCCTCCGATTCAGACCATAATCGCAAAAGACGTGTATGGGCAGTGTTGGAAGTTCAGACACATTTATAAAGGCACGCCAAGGAGGTACCTTTTGACTACTGGTTGGAGCAATTTCGTTAACCACAAGAAGCTTATTGCCGGTGACTCCATTGTTTTCCTCTGA 441 0.424 MRHESERDEGFARIDLWLWLTWSLLFQGDTMVAFNMVLRRCRNSFLDKNNNNGEKPASFAKTLTQSDANNGGGFSVPRYCAVTIFPRLDYSTEPPIQTIIAKDVYGQCWKFRHIYKGTPRRYLLTTGWSNFVNHKKLIAGDSIVFL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01605 146 SUPERFAMILY DNA-binding pseudobarrel domain 55 145 IPR015300 -
Aip05g01605 146 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 146 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip05g01605 146 SMART B3_2 59 146 IPR003340 GO:0003677
Aip05g01605 146 Pfam B3 DNA binding domain 59 145 IPR003340 GO:0003677
Aip05g01605 146 Gene3D - 57 146 IPR015300 -
Aip05g01605 146 CDD B3_DNA 58 145 IPR003340 GO:0003677
Aip05g01605 146 ProSiteProfiles B3 DNA-binding domain profile. 59 146 IPR003340 GO:0003677
Aip05g01605 146 PANTHER AUXIN RESPONSE FACTOR 16 4 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01605 Aip-Chr5 28839417 28840350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01605 4 146 B3 DNA Binding Superfamily AT2G28350 65.035 3.31e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip05g01605 B3 2.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01605 - - aip:107640480 234.572