Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01601 ATGCTGTTTCAGAGTAAGATAGCAGTAATAACGGGTGGCGATTTCGGAATAGGAAGAGCTGTATGCAACTTGTTTGCATTGGAGGGTGCACCCGTGGCTTTCACCTACGTGAAGGGCCAGGAAGACAAGGACGCGAAGGACAAGCTGACGCGGGCGGCAGCAGGGACAACCTGGGAGCATGGAATCTGCTATGGAGGTGAGGGGGAATTACGTGCTGCAATCAAGGCTCCCCGAATCACTTCCACGAATCTCATTAGTGTTAGAGGAACTATCGAAAGGTATAAGAAAGCAAGTGCTGCTTCCTCAAACACAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCCAAATTAAGAAGACAGATTCGTGATATTCAAAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTCGATCTAGAAAGGTATAG 507 0.4556 MLFQSKIAVITGGDFGIGRAVCNLFALEGAPVAFTYVKGQEDKDAKDKLTRAAAGTTWEHGICYGGEGELRAAIKAPRITSTNLISVRGTIERYKKASAASSNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01601 168 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 85 167 - -
Aip05g01601 168 Gene3D - 2 113 - -
Aip05g01601 168 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 52 IPR036291 -
Aip05g01601 168 Coils Coil 146 166 - -
Aip05g01601 168 ProSiteProfiles K-box domain profile. 112 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g01601 168 Pfam K-box region 110 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g01601 168 PANTHER SERUM RESPONSE FACTOR HOMOLOG 85 167 - -
Aip05g01601 168 Coils Coil 115 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01601 Aip-Chr5 28730388 28737014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01601 86 167 MADS-box Gene Family AT2G42830 78.049 1.15e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01601 K09264 - aip:107643483 179.489