Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01562 ATGTCTTCTGAACCAACCAACCTTGTGACCCGCAGCATCAACTATGGCGAGTCCCTTGGCTGTGAATGCCCTTATGGTAAGAAGTTTTGGAATTTGTTTCATTTGCAACCTATGCGAGATCAGAAGGGAGAAGTACAGTATTTTATTGGTGTTCAACTTGATGGTAGCCAACAATTGGAGCCTCTTCACAACTGCATTGCAGATGATACTGCCAAAGAGGGACAATTATTGGCTTTGGGCCTTGCTTATCAGCAATTGGGAAGGTATACTGCAGCCATAAAGTCTTATGGCCGTGCCATCGAGTTGGATGATAAGATGGTCTTTGCTTTGGTTGAAAGCCGAAATATCTCGTTGACACTTGGTTTATTTAGGAAGATTTCATCACAATGTGTGCCAGCACAATATGGGCTTGCTTTGGGGCTTCTTTGTTTAGCAAAAGATTGCATGAACCTGGGAGCATTTAAGTGGGGCGCTTCTTTATTAGAGGAAGCATCTGAGGTTGCAAGAGCAAGTGCTTATTCTGTTAGGAATGTCTCATGTAGGAAAACGCTGCCTTGA 558 0.4355 MSSEPTNLVTRSINYGESLGCECPYGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQQLEPLHNCIADDTAKEGQLLALGLAYQQLGRYTAAIKSYGRAIELDDKMVFALVESRNISLTLGLFRKISSQCVPAQYGLALGLLCLAKDCMNLGAFKWGASLLEEASEVARASAYSVRNVSCRKTLP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01562 185 PANTHER SUPERKILLER 3 PROTEIN-RELATED 78 180 IPR039226 GO:0006401|GO:0055087
Aip05g01562 185 ProSiteProfiles TPR repeat profile. 73 106 IPR019734 GO:0005515
Aip05g01562 185 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 78 180 - -
Aip05g01562 185 SMART pac_2 16 58 IPR001610 -
Aip05g01562 185 SMART tpr_5 73 106 IPR019734 GO:0005515
Aip05g01562 185 Pfam Tetratricopeptide repeat 78 103 IPR001440 GO:0005515
Aip05g01562 185 Gene3D Tetratricopeptide repeat domain 77 125 IPR011990 GO:0005515
Aip05g01562 185 Gene3D PAS domain 9 76 - -
Aip05g01562 185 SUPERFAMILY TPR-like 76 173 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01562 Aip-Chr5 26969963 26972764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01562 6 82 AGC Kinase Gene Family AT3G45780 57.143 3.95e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01562 K12600 - adu:107458672 190.274