Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01561 ATGGAATCAAAGATTAGTGATGATGTTCCCATTATTGGCATGGAATTCGAGTCTTTGGATGCAGTAATCGAATTCTACAATACCTACACTAGAAGAGTTGGCTTTGACTGGAGGAATAGGAGTTCGAAAAAGAATGCCGATGGGGTTGTATGCTATGTTATGCTTGTCTGCAACCAGGAGGACAGAGCCGAATCAAAAGTTGATGAAACAAGGAAGACCTATCCAAAAGGACCTACATGGTGTAAAGCCAGGATGATTGCCTTTTCTGATGTCGGCAGTAGTTGGATTGTTAGGGTAGTTAAACTGAAACACTGTCATGATCTGGACTGCACTAATATGAGGTTATTGAGGAGAAATAAGGTTATTTCTATGCAGGTTAAAATTACTTGCGAAATTGATTCTCAAGCCAGCATTTGA 417 0.4005 MESKISDDVPIIGMEFESLDAVIEFYNTYTRRVGFDWRNRSSKKNADGVVCYVMLVCNQEDRAESKVDETRKTYPKGPTWCKARMIAFSDVGSSWIVRVVKLKHCHDLDCTNMRLLRRNKVISMQVKITCEIDSQASI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01561 138 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 3 120 - -
Aip05g01561 138 Pfam FAR1 DNA-binding domain 24 108 IPR004330 -
Aip05g01561 138 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01561 Aip-Chr5 26885227 26885643 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g01561 FAR1 2.4e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01561 - K17604 aip:107640510 261.536