Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01550 ATGCAAACTATGACAGAAGAAGAGTACTTGGCTACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCACGNNNNNNNNCTAGGCACTTACAACATGTTGACCAGAATCTGAATTTCCACTGTCCTGCAACAGGCACCCAAGAAGATGCTGCTCGTGCTTATGACATAGCAGCCATCGAGTATTAG 240 0.4417 MQTMTEEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEAXXXXRHLQHVDQNLNFHCPATGTQEDAARAYDIAAIEY 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01550 79 ProSiteProfiles AP2/ERF domain profile. 26 79 IPR001471 GO:0003700|GO:0006355
Aip05g01550 79 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 79 - -
Aip05g01550 79 Pfam AP2 domain 25 79 IPR001471 GO:0003700|GO:0006355
Aip05g01550 79 Gene3D AP2/ERF domain 25 79 IPR036955 GO:0003700|GO:0006355
Aip05g01550 79 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 79 - -
Aip05g01550 79 SUPERFAMILY DNA-binding domain 25 79 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01550 Aip-Chr5 26574723 26575324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01550 1 79 AP2-EREBP Transcription Factor Family AT5G17430 55.696 3.58e-22 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g01550 AP2 2.9e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01550 - - lja:Lj1g3v2952280.1 109.768