Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01539 ATGGAGAAACCGGGTCGGGTCGGTCCGTTGAGGGGAAGGGAGGACCGGGTGCGCCGCAACAACGCGAACCACCTTCAGGATGAAAGCGATGTGCTCGGTGAGGCAAGTCTGGGCGAACGAAGAGGTCTGGGCTCTGGCAGGGATGCTTACATGCGGACAGGGGACCGTGACCAGGGCAGGGATGGTGGAAAGGACTCCGCTCCTGCGATTGCTGGCGGAGCGGCAAGAGGGCAGATCAGGACTGCTGGGCACAGCGCTGTCACTGTGTGGACTGGCGGCTGTGACCAGGGCAGGAGTGGTGGAAAAGCCATCCTACCTGTGACGGATGATGGGGCGGCAGGAGAGCAGAACGAGGCTGCTGGGCGAGGCGCTGATGTCGCGATTGATGACGGGGCAGCGAATCTTGGTGCGAGCTTCTGGCCTGGGTGTAACGGTGCGGTTGGGTTGTGGCAGAAGGGAGTAGGCGAGCCTGGCATTTGCAACGGCGCTAAAGCAACGGGAGAAGATAATGTTGCTGGTCATAGCTCGAGTGTGGTTAACGCAGGACCAATCTTTGCTGAAGCAACCGGTGCTTGTCCTGATTCGAATATGGGGGGAGGTCAGGTGCCTGTTCAAAGCGGCCCGGGGAGGAAATCCGGACAGAGTGAGGGGAGCCTTGAAGGGAATGAGGTTGGGTTAAATGAAGGTAGGAATGGGGCAGCAGACAATGAAACAAAGGCCTTGAAGCTggatgagcagatgcttgagaacaAGCCAACCATGCCATTTGGTCTGGTTTCGGCCTGGAACAAGCGCCGTCGAAGCAAGTCCGAAGATCATACTGACCCTTGGGTTTATAGACCTGCGGAGTGCTGGCAACTCGAAGAACAAGTAACACGACCTGCGAAAAGACTGCATGGATCAGCTGTGTTCACTCTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGACAATCTGCTAGGGAAAGGAGGATTCGGCAAAGTGTACCGCGGCATTTTACGGTCGGGAGAGGTCGTCGCAATCAAGAAGATGGCGCTGCCAGCAATTAAAGAAGCCGAGGGGGAACGTGAGTTCCGAGTTGAAGTGGACATCTTGAGCAGACTCGACCACCCAAATCTTGTTTCTTTGATAGGCTACTGTGCTGATGGAAAACATAGATTCCTAGTATATGAATACATGCATAATGGAAACCTGCAAGATCATTTGAATGGAATTGGAGAAAGAAAAATGGATTGGCCCCTAAGACTCAAAGTGGCACTAGGAGCTGCAAAAGGCCTTGCTTATCTCCACTCAAGTTCTGATGTTGGAATTCCCATTGTTCATAGAGATTTCAAATCAACCAATATTCTCTTAGATGCTAACTTTGATGCAAAGATATCTGACTTTGGGCTTGCCAAGTTAATGCCAGAAGGTCAAGAGACACATGTCACGGCCAGAGTTCTTGGAACCTTTGGCTATTTTGATCCTGAGTATACATCGACTGGGAAACTTACTCTGCAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAACTTTTGACTGGACGCCGAGCAGTTGATCTAAACCAAGGTCCCAATGATCAGAACCTTGTACTACAGGTGAGGCATATTCTGAATGATCGAAAGAAGCTGCGTAAGGTCATAGATCCAGAGATTGCCCGAAATTCTTACACTATTCAGTCTATAGTCATGTTTGCCAATCTGGCATCAAGATGCGTCCGAACTGATAGTAATGAGAGACCTTCAATGGCAGAATGTGTACAGGAACTCCTAATGATTATCTATACAAATTCAAAAGCTGGCATGGTTCAAGAAATTCCATATGCCATATTGTTCTAA 1848 0.4951 MEKPGRVGPLRGREDRVRRNNANHLQDESDVLGEASLGERRGLGSGRDAYMRTGDRDQGRDGGKDSAPAIAGGAARGQIRTAGHSAVTVWTGGCDQGRSGGKAILPVTDDGAAGEQNEAAGRGADVAIDDGAANLGASFWPGCNGAVGLWQKGVGEPGICNGAKATGEDNVAGHSSSVVNAGPIFAEATGACPDSNMGGGQVPVQSGPGRKSGQSEGSLEGNEVGLNEGRNGAADNETKALKLDEQMLENKPTMPFGLVSAWNKRRRSKSEDHTDPWVYRPAECWQLEEQVTRPAKRLHGSAVFTLKEMEEATCSFSDDNLLGKGGFGKVYRGILRSGEVVAIKKMALPAIKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGIGERKMDWPLRLKVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDANFDAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPEIARNSYTIQSIVMFANLASRCVRTDSNERPSMAECVQELLMIIYTNSKAGMVQEIPYAILF 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01539 615 ProSitePatterns Protein kinases ATP-binding region signature. 322 345 IPR017441 GO:0005524
Aip05g01539 615 MobiDBLite consensus disorder prediction 1 77 - -
Aip05g01539 615 Gene3D Phosphorylase Kinase; domain 1 284 394 - -
Aip05g01539 615 Pfam Protein kinase domain 317 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g01539 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Aip05g01539 615 MobiDBLite consensus disorder prediction 1 25 - -
Aip05g01539 615 MobiDBLite consensus disorder prediction 199 221 - -
Aip05g01539 615 ProSiteProfiles Protein kinase domain profile. 316 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g01539 615 SUPERFAMILY Protein kinase-like (PK-like) 303 602 IPR011009 -
Aip05g01539 615 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 254 607 - -
Aip05g01539 615 CDD STKc_IRAK 322 593 - -
Aip05g01539 615 PANTHER OS01G0750732 PROTEIN 254 607 - -
Aip05g01539 615 Gene3D Transferase(Phosphotransferase) domain 1 395 608 - -
Aip05g01539 615 MobiDBLite consensus disorder prediction 191 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01539 Aip-Chr5 26233185 26241595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01539 299 597 Receptor kinase-like Gene Family AT3G58690 47.697 6.85e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Aip05g01539 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01539 - - gmx:100796654 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01539 05 26233185 26241595 Aip05g01539 05 26233185 26241595 ECH