Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01531 ATGTGCTCGGACGCACCCTCGCAGCCCTCCTTCTCCCTTCTTCGTAGGTGGCTCACGGTCTCTCACCTCTCTCACCTTATTCTCGCTGTCTCGGCTCCCTATTCCTGCAGCTTAAAAGTCTTAAACTGCAACAATCCAACATTCCAAACCCTGCCTATGGCTTTGAGGGCGGCTGCGGTTGCGTTTGTTCTCTTCTCATCTCTAACTAGGGTGATGATCGATAGAGAAGGTTGTTCTAAAGGGTATGGTTTTGTACAATATGCCACTATAGAAGAGGCTGCAAAGGGCATCAAAAGCATGAATGGAAAGTTTTTGGATGGTTGGATTATATTTGTAGAGTATGCCAAATCTATCCCAGAACCTACGCAGCAATCTCACCGGTATCTCCGGCAGTAG 396 0.4773 MCSDAPSQPSFSLLRRWLTVSHLSHLILAVSAPYSCSLKVLNCNNPTFQTLPMALRAAAVAFVLFSSLTRVMIDREGCSKGYGFVQYATIEEAAKGIKSMNGKFLDGWIIFVEYAKSIPEPTQQSHRYLRQ 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01531 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 107 IPR000504 GO:0003723
Aip05g01531 131 Gene3D - 51 130 IPR012677 -
Aip05g01531 131 SUPERFAMILY RNA-binding domain, RBD 70 128 IPR035979 GO:0003676
Aip05g01531 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 117 IPR000504 GO:0003723
Aip05g01531 131 PANTHER NUCLEOLAR PROTEIN 8 45 125 - -
Aip05g01531 131 SMART rrm1_1 37 113 IPR000504 GO:0003723
Aip05g01531 131 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 2, MITOCHONDRIAL-LIKE 45 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01531 Aip-Chr5 25878843 25882375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01531 62 116 Eukaryotic Initiation Factors Gene Family AT1G34140 42.105 7.00e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01531 - - adu:107488830 146.747