Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01526 ATGCCATTACCATATTCTAAAATGTATAGGCTTCACTCTCAAATCCACCAGAGTAATGGTGCTCCTATTCTTTCTCCATATTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATAGTTCTTCTAATTCAGCTTCTTCATCCTCAGATTCTTCATCTGGGAATAGTAGAATAAGCCCTGCAATTATTTTCATCATAGTAATTTTATCTGTTGTGTTCTTCATCTTGGGCACCCTCCACCTGCTTGTTAGATTTCTCATGAGACAAAGATCTTCTTCTTCCTCATCAATTTCTCAATCCAATAGGTATCCTGAAATGTCTGAATCTGATGCATACCAGAGACAGTTGCAGCAATTATTCCACCTCCATGACTCAGGTTTAGATCAGGCTTTCATTGATGCACTCCCTGTGTTTCTCTACAAGGAGATAATTGGCTTGAAGGAGCCATTTGATTGTGCTGTTTGCCTTTGTGAGTTCTTGGAACAAGACAAGTTGAGGTTGCTGCCAAATTGCAACCATGCTTTTCACATTGACTGCATTGACACATGGTTGCTTTCAAATTCAACTTGTCCCCTTTGTAGAGGGACACTTTATGCACCAGGGTTTTCATTTGAGACCCCATTTTTTGACTTTGAAGGTCCATGTTATGAGGACGAAGATGGTGTTTCAGTTTCAGGATTTGGTGTCGATGGTGCTGGTTCTTCTAACAAGCCTGCTGAGAATCACATAAGGAATGGGAAGAGGGTTTTTTCTGTGAGGCTTGGAAAATTCAGAAGCTCAAATAATAATGGAGTAGATGGTGTTGAAAAATGTGAAGGAGAGAGTAGTAATAGTAGTATTAGTTTTAGTAATAGTCATGGTAATTTGGATGCAAGGAGATGCTACTCAATGGGGTCTTACCAATATGTTGTTGCTGATTCTGATTTGAGAGTGGCTTTGTGTCCAAGCATCAGTGGCAGTATGAGACAATTGATTAAGGGAAGAATAGCTACAACAAATGGGAACAATTTTTCTTCAACTGATGTTGATGTTGTTGAAGGAAAAAAGATCAGCAATGCAAGAAAAGGTGAGAGCTTTTCTGTTTCCAAGATATGGCAATGGTCTAGGAAGGATAACAGTAAGTTAACAAGTTCATCAGAGGCTCGAATTCCATAA 1194 0.3894 MPLPYSKMYRLHSQIHQSNGAPILSPYSPPSSSSSSSSSSSSSSSSSSSSSYSSSNSASSSSDSSSGNSRISPAIIFIIVILSVVFFILGTLHLLVRFLMRQRSSSSSSISQSNRYPEMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPNCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFSFETPFFDFEGPCYEDEDGVSVSGFGVDGAGSSNKPAENHIRNGKRVFSVRLGKFRSSNNNGVDGVEKCEGESSNSSISFSNSHGNLDARRCYSMGSYQYVVADSDLRVALCPSISGSMRQLIKGRIATTNGNNFSSTDVDVVEGKKISNARKGESFSVSKIWQWSRKDNSKLTSSSEARIP 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01526 397 SUPERFAMILY RING/U-box 144 213 - -
Aip05g01526 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 395 - -
Aip05g01526 397 CDD RING-H2_PA-TM-RING 164 207 - -
Aip05g01526 397 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Aip05g01526 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 212 IPR013083 -
Aip05g01526 397 SMART ring_2 165 206 IPR001841 -
Aip05g01526 397 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 395 - -
Aip05g01526 397 MobiDBLite consensus disorder prediction 19 68 - -
Aip05g01526 397 Pfam Ring finger domain 164 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01526 Aip-Chr5 25594352 25596777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01526 60 393 C3H Transcription Factor Family AT2G18650 41.551 2.06e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01526 - - gmx:100805154 441.039