Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01509 ATGATCGGTAAAACAAATGGGTCGGGTCGCCGGATTCTTACTTTTCCGGCGGTTCATCCATGCGTGAATGTTTCTCTCTCTACCGTAATCTCTTCCCTCATAGTCCTCTCTCGCTCCATCTCGAGTTTCCAATGGAGAACCTTCCCTTGCAACAAGCGAAACGCGAGGAACGCCATTCGTTTGGTTCATCTTCTCCAACCTTTCATCGACGAGATCCGGGAAAACCAATCAGGACTTCCGGATTCGGCTACGCTTTCGTTTTCCGAGCTCCACTTGACCTTCCAGAAGCTTCTTTTCCTATTGGAAGATGCTGCACGTGAAGGTGCAAGGTTGACGATGTTGATGGAGTCGGATCGAGTCGCCACACAGTTTGTGGTTTTGTCACGATCAATTGCCACGGCTTTGGATGTTTTCCCTTTTGATTCTGTCGATGTGTCCGAGGAAGTTAGAGACCAGGTTGTGTTGTTGATGAGGCAAGCGAGGAATGCAGTGTTTGAAGTTGAGGTTGACGATAAAAAGGCTTTGACTTGTGTTAGGTCGGTTTTGACCAGGTTTGAGAACCGGGTTGAACCGAATGAGGGTGATCTAAGGTTGGTTCTTGATTATATTGGGGTTAGGAAGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTCTTGCTGCTGAAATTGGGTTTCAGAGTAACAGTGAGGAGAAGTCAAAGGTTGGATTTTTATGTAGCTTGATGGGGTTCATGTGCTATTGTAGGTGCTTGGTGATGGAAGTTGTTGATGGTGAAGGTGGTAACAGCAACCCAAAACCTGAAGCCGGAAGAAAAATCAGTGTTGAAGATGAGAAAATTCTGAGTGGGCTCAACCCTGATGATTTTAGATGTCCAATCTCTCTAGAGCTGATGAGTGATCCAGTGACTATAGAAACAGGTCACACTTATGATCGTTCCTCAATTCTCAAATGGTTCAGGAGTGGGAATGCAATATGTCCCAAGACAGGTAAGAGGCTTATAAGCACGGAATTGGTCCCAAATTTGGTGCTTAAGAGGCTGATTCAGCAGCATTGCTATGTTAATGGCATTCCTTTTATTAGCGATTTGGGTAAAAGAAAGAGTAGCGACATCACTAGGACATTGCATCCAGGGAGTTTTGCTGCAGAGGGTGCCATGAAGATGCTGGCTAGTTCTCTCAGTGCCAGGCTTGAGAATGGAACAGCCATTGAAGAGAAAAACCGAGCCGCGTTTGAGATGAGGCTTCTTTCCAAAACAAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCCGGTTCGGTTTCTCATTTGTTGAAGATGTTGTCACTTAGGGATTCGTCAGCGCAAGAGAATGCCATTGCAGCACTTCTGAACCTCTCAAAGTACCCCAAGAGTAGAGCTCTAATGGCTGAGAGTTTGGGGTTAGCACTCATTGTTCGGGTCCTGAAGAACGGGCTAAAGATTGAAGCTCGCCAGCACGCTGCCGCGGTGTTGTTCTACCTTGCATCAGATGCTGAGTATAGGAAACTGATAGGGGAGGAACCAGACGCAATTCCTTCATTGGTGAGGCTGATCAAAGATGGTTCGGATCGCACCAAAAAGAATGGCTTGGTTGCAATGTATGGCATCCTCATGAACCAACATGAGAACCATAAGAGGGTACTTGCTGCAGGGGCAATCCCTTTGCTTATTGACATATTAAGAACATGTGAGAAAGAAGATCTTCTCACAGATTCACTAGCAATTCTGGCAACTCTTGCAGAGAAGAGTGATGGAGCAATGGCGATTCTTCAATGGGGAGTTCTGCATATAGCTGTTCAGATTCTTAGTTCTTCCACTTCAAGGATGGGGAAGGAGCACTGTGTGACTCTGCTGCTTTCTCTATCAATGCATGGAGGAGTGGATGTGGTTGCTGATTTGGTAAAGAGCACTTCGCTTATGGGGTCCTTATATTCCCAACTCAGTGAAGGCACATCTAGAGCAAGCAAGAAGGCCAGTGCCCTCATCAAGGTCCTCCATGATTTTTCTGAAAGGAGGTCCTCTGGCTTCAAGCCTTCAGTTATTCCACAAGAACAATTTGTTCACGTGTGGTAA 2088 0.4593 MIGKTNGSGRRILTFPAVHPCVNVSLSTVISSLIVLSRSISSFQWRTFPCNKRNARNAIRLVHLLQPFIDEIRENQSGLPDSATLSFSELHLTFQKLLFLLEDAAREGARLTMLMESDRVATQFVVLSRSIATALDVFPFDSVDVSEEVRDQVVLLMRQARNAVFEVEVDDKKALTCVRSVLTRFENRVEPNEGDLRLVLDYIGVRKWSECNKEVKFLAAEIGFQSNSEEKSKVGFLCSLMGFMCYCRCLVMEVVDGEGGNSNPKPEAGRKISVEDEKILSGLNPDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNAICPKTGKRLISTELVPNLVLKRLIQQHCYVNGIPFISDLGKRKSSDITRTLHPGSFAAEGAMKMLASSLSARLENGTAIEEKNRAAFEMRLLSKTSIFNRSCLVEAGSVSHLLKMLSLRDSSAQENAIAALLNLSKYPKSRALMAESLGLALIVRVLKNGLKIEARQHAAAVLFYLASDAEYRKLIGEEPDAIPSLVRLIKDGSDRTKKNGLVAMYGILMNQHENHKRVLAAGAIPLLIDILRTCEKEDLLTDSLAILATLAEKSDGAMAILQWGVLHIAVQILSSSTSRMGKEHCVTLLLSLSMHGGVDVVADLVKSTSLMGSLYSQLSEGTSRASKKASALIKVLHDFSERRSSGFKPSVIPQEQFVHVW 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01509 695 SUPERFAMILY ARM repeat 399 669 IPR016024 -
Aip05g01509 695 Pfam U-box domain 285 350 IPR003613 GO:0004842|GO:0016567
Aip05g01509 695 CDD RING-Ubox_PUB 288 330 IPR045210 -
Aip05g01509 695 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Aip05g01509 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 356 IPR013083 -
Aip05g01509 695 PANTHER U BOX DOMAIN-CONTAINING 4 684 - -
Aip05g01509 695 SUPERFAMILY RING/U-box 276 358 - -
Aip05g01509 695 SMART arm_5 460 501 IPR000225 GO:0005515
Aip05g01509 695 SMART arm_5 418 459 IPR000225 GO:0005515
Aip05g01509 695 SMART arm_5 544 586 IPR000225 GO:0005515
Aip05g01509 695 SMART arm_5 502 543 IPR000225 GO:0005515
Aip05g01509 695 Gene3D - 383 678 IPR011989 -
Aip05g01509 695 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Aip05g01509 695 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 684 - -
Aip05g01509 695 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 556 599 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01509 Aip-Chr5 25034960 25037367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01509 1 695 U-box Gene Family AT1G60190 47.525 0.0 588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01509 05 25034960 25037367 Aip05g01509 05 25034960 25037367 ECH