Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01462 ATGGTGGTGGTGATAGAGCAGCAAGAGACTGAGGATCGAAACGCGAATCCTTCCAACGCTGCCGGTAACGACGCTTCCGACGGTTTTGAAACGGCCAGCGACACCGACCTGGGCAGCGACACCGGAGGCGATGACGTCGGTGCTAGCAGCCATGATCAACAGCTCGAACAACCGCAACAGCAACATCAACAACAGCAGCCGAAGCCAGAGCATTCGGAGCCGGAACCTGAGCAGAGTGTTTCTCCAAGTAATAGTTTCTCTGGGGATCCCTTGATCAACGAGGAATTGGAGAAGAAAGCATTGGTTCAAGCAAATGAGGCAAAGGCAGAAGGGAACAAGCTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACTTGCTCTACAAGTTGCACCTGATATGCCTTCATCTGTTGAAATACTCTCAATATGTCATGCAAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACACAGTTAAAGAATGCACAAAAGCATTAGATCTGAATCCAGTGTATATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATCAGGCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAATGATGAAGGAAGAGATGATTGCAAAACTAAAAGAAATGGGAAATTCTGTCTTGGGCCGGTTTGGGATGAGTGTCGATAACTTCAAAACAGTTAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAGCGTTAA 831 0.4525 MVVVIEQQETEDRNANPSNAAGNDASDGFETASDTDLGSDTGGDDVGASSHDQQLEQPQQQHQQQQPKPEHSEPEPEQSVSPSNSFSGDPLINEELEKKALVQANEAKAEGNKLFVDGKYEEALSQYELALQVAPDMPSSVEILSICHANRAVCFQKLGKYDNTVKECTKALDLNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKREMMKEEMIAKLKEMGNSVLGRFGMSVDNFKTVKDPNTGSYSISFQR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01462 276 MobiDBLite consensus disorder prediction 9 38 - -
Aip05g01462 276 Gene3D Tetratricopeptide repeat domain 50 243 IPR011990 GO:0005515
Aip05g01462 276 SMART tpr_5 145 178 IPR019734 GO:0005515
Aip05g01462 276 SMART tpr_5 179 212 IPR019734 GO:0005515
Aip05g01462 276 SMART tpr_5 104 137 IPR019734 GO:0005515
Aip05g01462 276 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Aip05g01462 276 MobiDBLite consensus disorder prediction 76 90 - -
Aip05g01462 276 Pfam Tetratricopeptide repeat 149 176 IPR019734 GO:0005515
Aip05g01462 276 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 10 276 - -
Aip05g01462 276 MobiDBLite consensus disorder prediction 46 67 - -
Aip05g01462 276 Pfam Tetratricopeptide repeat 180 212 IPR013105 -
Aip05g01462 276 SUPERFAMILY TPR-like 104 222 IPR011990 GO:0005515
Aip05g01462 276 MobiDBLite consensus disorder prediction 1 90 - -
Aip05g01462 276 ProSiteProfiles TPR repeat profile. 104 137 IPR019734 GO:0005515
Aip05g01462 276 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 10 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01462 Aip-Chr5 23255217 23259491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01462 104 246 Calmodulin-binding Proteins AT3G25230 36.424 1.65e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01462 K24926 - gmx:100808386 353.599