Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01454 ATGGAGGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCCCTCATGACGCCGGAGAATCTGATCTTCCCTGCCGACTACCACAGCTTCCTCATGTCCGCTTCCTCGTCCTCCTCCGCCTCCGCCGCCGCAGCTACGATTCCTATGCTCGGATCCGACGAGCTTCTCTCTGCCGCTGGAATTCAACAGCAGCAACCACCGCACAACAACGAGGCCATGGCATCGACCATGATGAAAGCTAAAATCGCTTCTCATCCTCACTACCCTCGCCTCCTGCAAGCCTACATCGATTGCCAGAAGGTCGGCGCACCTCCAGAAATCGCGTGTTTGTTGGAGGAAATTCGCCGCGAAAACGACCTTTTCAAGAGAGACGACGTCGTTTCCACGTGCTTCGGAGCCGATCCCGAGCTGGACGAGTTCATGGAAACGTACTGTGAGTTGCTGGTGAAGTATAAATCGGACCTGGCTAGGCCGTTCGATGAGGCAACGAGCTTCCTTAACAAGATCGAAATGCAGTTAAGCAATCTCTGCTGCAACGGTGCTTCTGTTCCAACTCTTTCTGATGATGGAGCTGTGTCTTCAGAGGAAGATTTTAGTGCTGGAGATGGTGATGGAGGTCAAGATGGTCAATCAAGGGGTGAAGATCGTGAGCTTAAGGACAGGCTTCTGCGCAAGTTTGGGAGCCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTGCCTAAGGAAGCAAGGCAAACACTCCTTCAATGGTGGAATGTTCACTACAAATGGCCTTATCCTACGGAAGCTGACAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAGCCATCTGAGAATATGCAATTTTCTATGATGGAAAATCTTGGTGGCCGATTCCTTCCAGATGAATGA 972 0.5 MEEMYGVPSTAEYADKALMTPENLIFPADYHSFLMSASSSSSASAAAATIPMLGSDELLSAAGIQQQQPPHNNEAMASTMMKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDLFKRDDVVSTCFGADPELDEFMETYCELLVKYKSDLARPFDEATSFLNKIEMQLSNLCCNGASVPTLSDDGAVSSEEDFSAGDGDGGQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLGGRFLPDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01454 323 Pfam ELK domain 220 241 IPR005539 GO:0003677
Aip05g01454 323 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Aip05g01454 323 Pfam KNOX1 domain 81 122 IPR005540 GO:0003677|GO:0005634
Aip05g01454 323 SUPERFAMILY Homeodomain-like 241 312 IPR009057 -
Aip05g01454 323 SMART HOX_1 242 307 IPR001356 GO:0003677
Aip05g01454 323 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Aip05g01454 323 SMART ELK_2 220 241 IPR005539 GO:0003677
Aip05g01454 323 CDD homeodomain 252 304 IPR001356 GO:0003677
Aip05g01454 323 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 313 - -
Aip05g01454 323 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Aip05g01454 323 Gene3D - 239 312 - -
Aip05g01454 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 313 - -
Aip05g01454 323 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Aip05g01454 323 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Aip05g01454 323 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Aip05g01454 323 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Aip05g01454 323 MobiDBLite consensus disorder prediction 192 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01454 Aip-Chr5 22781936 22790278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01454 1 323 Homeobox Transcription Factor Family AT1G23380 62.985 3.67e-147 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aip05g01454 KNOX2 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01454 - - gmx:100794719 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01454 05 22781936 22790278 Aip05g01454 05 22781936 22790278 ECH
Aip05g01454 05 22781936 22790278 Aip05g01454 05 22781936 22790278 PCT