Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01421 ATGTCATTATATTACTCTGATTGGGCCTGCTATGATGTTTTGAGGTTTGTTATGGAAAATGGCGCCAAGGGATGCAAGGTCATCGTTAGTGGCAAGTTGAGGGCTCAGTGTGCTAAATCCATGAAGTTCAAGGACGGGTACATGATTTCCTCAGGGCAACCAGTCAAGGACTACATTGATTCTGTGTTGGAAGAGTTTGCTTGTTGTAACAGATTAGCTTACAAGGAAATTAAATTGACCATTGCAGCCCTGCAACATATAAGACAGATTGCACAAGAATCTAGCGGAGAAATTCAGTATGGTGGGGGAAGCCAGCCTACTGTGTTGAGGACATTTAGCCAGAGACTATGCCGGGGGTTCAATGATGCTGTTAATGGGTTTGTGGAGGATGGTTGGTCACTGCTGGGCAATGATGGGGTAGAAGATGTGACTATAGCTATAAACTCATCTCCCAACAAATTTTTGGGGTCCCAGTACAATTCATCAATGTTCCCAGCTTTTGGAGGTGGGGTTCTATGTGCCAAGGCATCCATGCTGTTGCAGGCTACTCCTTATGCTGTTCCTTGTGCAAGACCTAGTGGTTTCCCAAACACCCAGGTCATTTTACCACGTACTCATACTAGTTTTAAAAATCTTGAAGTTGCTAGATTGCGTATCCTCCAGTTGCTAGGTTGA 675 0.4444 MSLYYSDWACYDVLRFVMENGAKGCKVIVSGKLRAQCAKSMKFKDGYMISSGQPVKDYIDSVLEEFACCNRLAYKEIKLTIAALQHIRQIAQESSGEIQYGGGSQPTVLRTFSQRLCRGFNDAVNGFVEDGWSLLGNDGVEDVTIAINSSPNKFLGSQYNSSMFPAFGGGVLCAKASMLLQATPYAVPCARPSGFPNTQVILPRTHTSFKNLEVARLRILQLLG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01421 224 Pfam Ribosomal protein S3, C-terminal domain 9 65 IPR001351 GO:0003735|GO:0006412
Aip05g01421 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 78 185 IPR044830 GO:0003700
Aip05g01421 224 Gene3D - 3 90 IPR036419 -
Aip05g01421 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 78 185 - -
Aip05g01421 224 SUPERFAMILY Ribosomal protein S3 C-terminal domain 7 60 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01421 Aip-Chr5 21815069 21817429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01421 78 217 Homeobox Transcription Factor Family AT2G34710 58.621 2.02e-60 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01421 K09338 - gmx:100779499 226.868