Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01416 ATGAAGGTCATCGCCGCCTACCTCCTCGCCGTCCTCGGTGGCAATGCCGCTCCTTCCGCCGCCGATCTCAAGGGCATTCTCAGCTCCGTTGGAGCTGAAGCAGATGATGACAGCATAACGCTCCTTTTATCTGAAGTTAAAGGCAAAGACATAACAGAGGTTATTGCCGCCGGAAGGGAAAAGCTTGCGTCGGTGCCTGCTGGTGGTGGTGGTGCTGTTGCCGTTGCCGCTGCTCCTAGCGGTGGTGCTGCTGCTCCCGCAGCCGCCGAGGCAAAGAAGGAGGAGAAGTTTTTCCTGAAAAATGATGCATCTAAAATAGGACCAAACCTCACGGCTGCATTCATTCCGAAGGCGAACATGATTGTCCAGCCCAAGATATTCATGCTGCAAAGTCATCATCAGAAAAACATGCATGAATCGCCAGCATTGGAAAAGATAACCAGCGAACAAAATCAGGACCATAAAGTACCAAACTTCCAAGCTGCACAAGATTTTAAGGAAACATATGGAAGAATATATATCTTTTGGGTAGATAAAAAAAACTTGTGA 549 0.4863 MKVIAAYLLAVLGGNAAPSAADLKGILSSVGAEADDDSITLLLSEVKGKDITEVIAAGREKLASVPAGGGGAVAVAAAPSGGAAAPAAAEAKKEEKFFLKNDASKIGPNLTAAFIPKANMIVQPKIFMLQSHHQKNMHESPALEKITSEQNQDHKVPNFQAAQDFKETYGRIYIFWVDKKNL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01416 182 Hamap 50S ribosomal protein L12 [rpl12]. 2 99 IPR027534 GO:0003735|GO:0005840|GO:0006414
Aip05g01416 182 Gene3D - 1 59 IPR038716 -
Aip05g01416 182 Pfam 60s Acidic ribosomal protein 18 96 - -
Aip05g01416 182 CDD Ribosomal_P2 1 64 IPR044076 GO:0002182|GO:0003735|GO:0022625
Aip05g01416 182 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 2 96 - -
Aip05g01416 182 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2 96 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01416 Aip-Chr5 21636479 21638939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01416 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 72.857 2.76e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01416 K02943 - tcc:18590362 108.227