Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01403 ATGTGGGAGAGAACGGCGTATGGTGCTGTGGGAGTTTTGCAGTTTGAACAAAGTGGAGATGGAAGAGAGTTGGGGCTGGGAATAGAGAGTAGATGGCGCAGCAAACAACACAACAGTAAAGACACGCAACCGAAGGAATTGCTTCCGAGCATCGAGTTCAACGCATCTCAACTCGGTTCACTTCTCCAGATCCAGATCCAAATCCAATCATCTCTTCTTTTTCACGCACATCATAGGTCAGAACACATGCACAAACTTGATCCAGGAAGTCAGCAATTTGAATTCTCAGAAAATACAAATCAGATTGGTTCTTCATGTTTAGAAAATGAACAAAAGGTGCTAATCAGTATGAAGAATAGCACCGTCTTTGATGAAAAGTTACATCAAGGTTCTGATAATATGAGAGGGAATTCTCTTATTCAACTATCTGCTCCTCCTCAATATGTTTTGGTAAAGAGTTCTCAGATTGGAGAAGGTTCTTGCGATAAAAAAGTTACTGTCGAGCCAGAACTGGCCTTTCGAGATTTATCTGATTATAACTCACAAAGGAAATCTCAACCAGCCTCCCAAAATGTTCAAAATGGATCCGTAGAATCAACTAACTCAATAAGTAGCCTTTTTGTTCAGGATCAAATGCAGCCGAGTCCTGCACAAGAGAACATGAGCTCAGTGATTGAACACTTGGACCTGCCTACTGGGGATGTTGCAGGAAATGATGGTCCTAACTGTTTGCAAAGAAAGTCTAAAAGGCTGACTCAAATGAGGTTAAAGTCGGAGGACGGCAGAACTCCAAAATTACTCAAGGGAAAATATACACTCAGGTCTTCGAGAAGCAGTGACAGAGCTTTGCAGTCGCAGACTCGAGAAAAATGTAAAGTGCCTGAACTAAGTAGCGACTTGATTGATGTTAAAAATGTTGGAGAGAAAAAGAGAAGAGGGAGGAAGAGAAAACAGTGGGGAGGAGAGGGGATTATTGATGAATTTTCAAGAATAAGGAGTCACTTACGATATTTATTGAACAGAGTAAGCTATGAGCAGAGCTTGATTGATGCTTATTCTGGCGAGGGCTGGAAAGGATACAGCATTGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGAGCTAAGTCTGAAATTCTTAGGAGAAAATTGAAAATTAGGGATCTATTTTGGAATTTGGGTTTATTGTGTGCTGAAGGAAAGCTTCCAGAGTCTTTGTTTGATTCCGAAGGAGCAATACGCAGTGACGATATTTTCTGTGCAAAATGCGGGTCCAAAGAGCTGACCACTGATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAATGCTGTTTAAGTCCTCCATTGTTAACTAAAGACATTCCGCCGGGCCATGATATTTGGCTATGCCCAGGATGTAACTGCAAACTTGAATGCATTAAACTTCTTAATGACTTCTTAGGAACAAGTCTTTCTATTAGGGACACCTGGGAGCGGGTTTTTCCTGAAGCAACAGAGGCTGCTGGAACCAATGCGGGCCATAGCCTGGGACTTCCTTCAGTTGATTCTGATGACAACGATTACAAGCCTAAAGCTCCAGAAGATGAAGAGGATGAAGGTGGAGAATCAAGCTCTGATGGATCTGATTATGCTTCTGATTCTGAGAAATTGAAAGATTTGCATTCAGAGGATGATGATTATGATCCAAATGCTCCAGATACTGATAGGGAAGCCTCTGAAGAAAATTCAAGCTCTGGTTTCATTTCTGATGACACTGTGGACGAAGCTCAAATGCTTGCACCACAGGATGATATTATGAAGTGTAAAAGCTCTCGCAGTAAAAAGTTCAAAGTTGGTTAG 1851 0.4155 MWERTAYGAVGVLQFEQSGDGRELGLGIESRWRSKQHNSKDTQPKELLPSIEFNASQLGSLLQIQIQIQSSLLFHAHHRSEHMHKLDPGSQQFEFSENTNQIGSSCLENEQKVLISMKNSTVFDEKLHQGSDNMRGNSLIQLSAPPQYVLVKSSQIGEGSCDKKVTVEPELAFRDLSDYNSQRKSQPASQNVQNGSVESTNSISSLFVQDQMQPSPAQENMSSVIEHLDLPTGDVAGNDGPNCLQRKSKRLTQMRLKSEDGRTPKLLKGKYTLRSSRSSDRALQSQTREKCKVPELSSDLIDVKNVGEKKRRGRKRKQWGGEGIIDEFSRIRSHLRYLLNRVSYEQSLIDAYSGEGWKGYSIEKLKPEKELQRAKSEILRRKLKIRDLFWNLGLLCAEGKLPESLFDSEGAIRSDDIFCAKCGSKELTTDNDIILCDGACDRGFHQCCLSPPLLTKDIPPGHDIWLCPGCNCKLECIKLLNDFLGTSLSIRDTWERVFPEATEAAGTNAGHSLGLPSVDSDDNDYKPKAPEDEEDEGGESSSDGSDYASDSEKLKDLHSEDDDYDPNAPDTDREASEENSSSGFISDDTVDEAQMLAPQDDIMKCKSSRSKKFKVG 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01403 616 SUPERFAMILY FYVE/PHD zinc finger 411 478 IPR011011 -
Aip05g01403 616 CDD PHD_PRHA_like 418 470 IPR045876 -
Aip05g01403 616 MobiDBLite consensus disorder prediction 546 577 - -
Aip05g01403 616 ProSitePatterns Zinc finger PHD-type signature. 419 470 IPR019786 -
Aip05g01403 616 MobiDBLite consensus disorder prediction 252 267 - -
Aip05g01403 616 MobiDBLite consensus disorder prediction 597 616 - -
Aip05g01403 616 ProSiteProfiles Zinc finger PHD-type profile. 416 473 IPR019787 -
Aip05g01403 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 467 IPR013083 -
Aip05g01403 616 Pfam PHD-finger 418 473 IPR019787 -
Aip05g01403 616 MobiDBLite consensus disorder prediction 505 591 - -
Aip05g01403 616 MobiDBLite consensus disorder prediction 178 197 - -
Aip05g01403 616 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 201 588 - -
Aip05g01403 616 MobiDBLite consensus disorder prediction 230 289 - -
Aip05g01403 616 PANTHER HOMEOBOX PROTEIN HAT3.1 201 588 - -
Aip05g01403 616 SMART PHD_3 418 471 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01403 Aip-Chr5 21223910 21235040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01403 326 554 Homeobox Transcription Factor Family AT3G19510 59.091 3.15e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip05g01403 PHD 6.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01403 - - adu:107488674 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01403 05 21223910 21235040 Aip05g01403 05 21223910 21235040 ECH