Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01393 ATGAGTTCCGTGAACCTCAACACAAGTTTCCTGTTCCACCAAGGCAGCAGATCCAGATCTCCAACTTTTCATCTGTTCCACACACTCACAAAACTCCCCATTTCTTCAATTACCACGAAGAAGCCACAAAAAGGGAATCGATTTTTTCCTTTTCCTTCATTCTCGGTCTCCGTGGTGCTTACCAAAGAAGAAGTCCTCAAGGGCAAAGAAGAAAATAAAGAGAGCGAGAAACCCGCTTTCAATTTCAAGTCCTATATGGTCAATAGAGCGAGAAACTTTGACAACCTCCCCTCGCTGCGCCATTTTGAGGATTTGATGGTGACTCCCTTGGCGCTCACCGTCTGTCACGGAGGGAGCGCCGGAGCTGTCACAGAGGGAGCGCCGGAGCTTCTCCCGAAAGAGAAGGATTCAGAAGGCGGCGAAGGTGGAAACAAACAAGGACAACAAGGGAAGGCGTCAGAGGGAGAAGAACGAGCTAGCGAATCGCCTTGCAAAGCTGAGTCGCAGCGCGGCATGATGAAGAGTTCAGATAAACCTCCGAAGGGGTCGAATTCAGGAACCCTAGCTGCTGAATCACCTGTTGTGAACAATCGGAGTGATGCAGAATTGCAGGGGAGCCCTGCTACGCCGAATATGGATGTCAAAGCTGAAATTTCTGATGGTTACAGCTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCCACAGGATCTCGAAGCTATTACAGGTGTACTCATTCAGAATGTTCTGCAAAGAAGATTGAATGCAATGATGATGTGGGTCGTGTAATAGATGTTGTTTATAAAAGTCAACACAGTCATGATCCCCCACATAAGCTCAATTCTACAAGGGAAAGTTTGAGCAACTGGAACATTTATGCACTTACTCACTTTGATAGTTTTGGATTAGGTGATTGCTATGGTGCTTAA 930 0.4688 MSSVNLNTSFLFHQGSRSRSPTFHLFHTLTKLPISSITTKKPQKGNRFFPFPSFSVSVVLTKEEVLKGKEENKESEKPAFNFKSYMVNRARNFDNLPSLRHFEDLMVTPLALTVCHGGSAGAVTEGAPELLPKEKDSEGGEGGNKQGQQGKASEGEERASESPCKAESQRGMMKSSDKPPKGSNSGTLAAESPVVNNRSDAELQGSPATPNMDVKAEISDGYSWRKYGQKQVKSPTGSRSYYRCTHSECSAKKIECNDDVGRVIDVVYKSQHSHDPPHKLNSTRESLSNWNIYALTHFDSFGLGDCYGA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01393 309 SMART WRKY_cls 218 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g01393 309 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 140 288 IPR044810 GO:0003700
Aip05g01393 309 SUPERFAMILY WRKY DNA-binding domain 218 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g01393 309 MobiDBLite consensus disorder prediction 121 193 - -
Aip05g01393 309 MobiDBLite consensus disorder prediction 178 193 - -
Aip05g01393 309 Pfam WRKY DNA -binding domain 220 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g01393 309 ProSiteProfiles WRKY domain profile. 213 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g01393 309 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 140 288 - -
Aip05g01393 309 Gene3D WRKY domain 208 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01393 Aip-Chr5 20848480 20853809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01393 190 301 WRKY Transcription Factor Family AT4G30935 48.673 6.27e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip05g01393 WRKY 1.4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01393 - - aip:107641760 417.927