Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01380 ATGGCTTCAAATTCAAGCTCCAATTCGAAGAAAAACAAAGGCCGCCAAAAGATCGAGATGAAGAAGATGATGAAGGAGAGCAACTTGCAAGTGACATTCTCAAAGCGTCGCGGTGGGCTTTTCAAGAAAGCGAGCGAGCTAAGCACCCTTTGCGGTGTTGAGTTGGCACTCATCGTGTTCTCTCCGGGGAACAAGGCCTATTCTTTTGGGCACCCCAGCGTGGAAGCCCTCATCAAAAGCTTCACGGAAGGTGGGGGCCCGCCACACCTGGACGCCGCCACCGTCCACTTCACGACGGAGGCTCATGATGAGCTCAACACATTGCTGGCGAAGATCAACGAGGAGATCGAAGCGGAGAGGAAGCAGTTGGAGGAAATGAAACGCTGGCGGAAGGAGGCAGAGGCTAAGTGGTGGTGGGCTGCTCCTGTTGGTGAGATGAGTGTGCCCAAACTGAAGCAATATAAAGTGGCGCTGGAGGAGCTGAAGAAAACCGTTACTTGCCACTTTGAAAAGCTTCGTATTAACAAAGACCCTGTGGCTGTGGGGAATTATACTCCTAATAACATGATGCCGCTGCATGTGCCGATGCCAGTGCCGTTACCGCCAATATTTTTCTCGTCGCTGTTTCAAAACTCTCAGATGCATAATCATCATCAAGCATTTGGAGATGAGATACCGTACCACCAGTTTTATAGCTACACTGCCATGCTGCAGCAGGGAGGAGGATCTCCCTTTGGACCGTACACTCGTAACAACTAA 759 0.5072 MASNSSSNSKKNKGRQKIEMKKMMKESNLQVTFSKRRGGLFKKASELSTLCGVELALIVFSPGNKAYSFGHPSVEALIKSFTEGGGPPHLDAATVHFTTEAHDELNTLLAKINEEIEAERKQLEEMKRWRKEAEAKWWWAAPVGEMSVPKLKQYKVALEELKKTVTCHFEKLRINKDPVAVGNYTPNNMMPLHVPMPVPLPPIFFSSLFQNSQMHNHHQAFGDEIPYHQFYSYTAMLQQGGGSPFGPYTRNN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01380 252 Coils Coil 102 136 - -
Aip05g01380 252 Gene3D - 89 178 - -
Aip05g01380 252 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Aip05g01380 252 CDD MADS_MEF2_like 14 81 IPR033896 GO:0000977|GO:0045944
Aip05g01380 252 SUPERFAMILY SRF-like 14 92 IPR036879 GO:0003677|GO:0046983
Aip05g01380 252 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Aip05g01380 252 PANTHER MADS BOX PROTEIN 12 180 - -
Aip05g01380 252 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Aip05g01380 252 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Aip05g01380 252 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Aip05g01380 252 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 12 180 - -
Aip05g01380 252 Gene3D - 26 86 IPR036879 GO:0003677|GO:0046983
Aip05g01380 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01380 Aip-Chr5 20592766 20593725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01380 10 167 Type I MADS-box Gene Family AT5G60440 49.693 5.94e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip05g01380 SRF-TF 3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01380 - - adu:107488602 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01380 05 20592766 20593725 Aip05g01380 05 20592766 20593725 ECH
Aip05g01380 05 20592766 20593725 Aip09g03829 09 144881466 144881993 PCT