LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g01374	ATGGACAAGGACAAGGACACACCTTTAGTTATGTATATGTTTGTCATTTGTATGTTATTGTTATGTGTTGGAAGCAGCACAGACCCTCTTGACACATATTGTCCAACTGAATTCCCATTATATAGCAGCAACAGCACATTTGACAATAACCTGAAGCTTCTTTTGGGGTTGCTGCCCTCCAACACGGCTTCCAAGAATGGCTTCTACAACACATCCGTGGGAGATGGGGAAGACAAGGTGTACGGACAAGCACTGTGCAGAGGAGACATCACCAACTCCACAGTCTGCAAGGAATGCATTCAGAAAGCAAGCCAAGATTTAACAAAGATGTGCAACAGTGAAGATGCAATCATATGGTATGAGCTTTGCCAAGTCCGCTACTCCTTTCAGATGTTCTTCACGAGTATGACTTACACCGGGAAGTATCCTAACCATAATCTTAAGGAGAAGAATATCTCGCACCCTTCTGGATTTGATCAAGTCTTGGCATATCTGATGAACAACCTCTCACAAGAAGCAGCTTTTATTCCTGCCAACAACATGTTTGCAGCAGGGGAGATTCAATATTCTGGTTCTGATGGTATCAAGAACAAGAAGCTTTATGGACTAGTCCAGTGTACCAGGGATACCTCTCAAGCAGACTGTGCCACTTGCTTGAGTTCTGCCTTAACAGAACTTACTCAATGCTGCTCCTTCCGAGAAGGCGGTATCATTCTTAGTCGGACTTGCAATGTGAGGTTTGAATCATACAGGTTCTTCAACCATTCATCAGCAAAGATGCTGCTCTTTCCGACTTCCAAAGGAGGGGAAAAATGGAAGCCATGGATGTTTGCATTGACAATTGGTGGTTCACTCTTAGTATTAGCAGTTACTATTTTGCTGTGCACTGCTTGCCTGCTCCGCAAAGGGGACACAGAGAGAGATGAAGAAAGGATCGAAAGGACGCTACTACAACAGTTGGCAAGCTCCAAGAGCGTAGCAGTTACACAGGAAGGTGACCTGATTAGCTCTGATGAACTGTCGTTCATGAACTTAGCAACCATTAAGGATGCCACTGATGACTTCTCTGATACAAATAAACTGGGACAAGGAGGATTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGCAGTGAAGTTGCAGTTAAAAGGCTATCAAAAAAGTCTTGGCAAGGGATAGAGGAATTGAAAAATGAGGTCATACTCATTGCCAAGCTTCAGCATAAGAATCTAGTGAGGCTGTTGGGGTGTGGCTTAGAGGGGGATGAAAAATTTCTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGACCCAGAGAAACGTTCCGAGTTTGATTGGCATACTTGGTATGGGATTATCAATGGCATTGCGAGAGGACTGCTTTATCTTCACGAGGAGTCTCGGCTTAAAATCATTCACAGGGATTTAAAGCCAAACAATGTGTTGTTGGACCATGAAATGGTTGCCAAAATATCAGATTTTGGTATGGCTAGGATATTTTACGAGAATCAAAATACAGCAAACACAAAGAGAGTTGTGGGAACATATGGATATATGGCTCCCGAATATGCAATGGAAGGACTCTTCTCAGTAAAATCGGATGTGTTCAGCTTTGGTGTCATGTTGCTTGAAATAATCAACGGGAAAAGAAACAGTGGGTTCTACACAACAGAACTTGCCCCAACACTACTGGCATATGCATGGCAGCTGTGGAATGAAGAGAGGAAGTTGGAATTTGTGGATCCAGTGTTGTTGGAATCGTGTGTGGCCTGTGAAGTTGTGAAGTGCATGCACATTGGGCTTCTGTGTGTGCAGGAAGATCCGGAGCTGAGGCCTAACATGTCAAGCGTGGTGGTTCTCCTAGGAAGTGAACAAATGGCTCTTCCAAAACCAAGTCAACCAGCATTTTCATTGGGTAGGGCGTTTCATGTTGATCAAGATCCAGGTCCAGCCACTACAACCAATCCTTCTATGAACGGGGGGAGTATATTGTCCAGTGTCTTACCTAGATGA	2028	0.4369	MDKDKDTPLVMYMFVICMLLLCVGSSTDPLDTYCPTEFPLYSSNSTFDNNLKLLLGLLPSNTASKNGFYNTSVGDGEDKVYGQALCRGDITNSTVCKECIQKASQDLTKMCNSEDAIIWYELCQVRYSFQMFFTSMTYTGKYPNHNLKEKNISHPSGFDQVLAYLMNNLSQEAAFIPANNMFAAGEIQYSGSDGIKNKKLYGLVQCTRDTSQADCATCLSSALTELTQCCSFREGGIILSRTCNVRFESYRFFNHSSAKMLLFPTSKGGEKWKPWMFALTIGGSLLVLAVTILLCTACLLRKGDTERDEERIERTLLQQLASSKSVAVTQEGDLISSDELSFMNLATIKDATDDFSDTNKLGQGGFGAVYKGVLPDGSEVAVKRLSKKSWQGIEELKNEVILIAKLQHKNLVRLLGCGLEGDEKFLIYEFMSNKSLDQFIFDPEKRSEFDWHTWYGIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDHEMVAKISDFGMARIFYENQNTANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVMLLEIINGKRNSGFYTTELAPTLLAYAWQLWNEERKLEFVDPVLLESCVACEVVKCMHIGLLCVQEDPELRPNMSSVVVLLGSEQMALPKPSQPAFSLGRAFHVDQDPGPATTTNPSMNGGSILSSVLPR	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip05g01374	675	MobiDBLite	consensus disorder prediction	653	675	-	-
	Aip05g01374	675	ProSiteProfiles	Gnk2-homologous domain profile.	140	252	IPR002902	-
	Aip05g01374	675	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	476	488	IPR008271	GO:0004672\|GO:0006468
	Aip05g01374	675	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	12	655	-	-
	Aip05g01374	675	ProSiteProfiles	Gnk2-homologous domain profile.	28	132	IPR002902	-
	Aip05g01374	675	MobiDBLite	consensus disorder prediction	651	675	-	-
	Aip05g01374	675	SMART	serkin_6	355	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip05g01374	675	Gene3D	Phosphorylase Kinase; domain 1	316	430	-	-
	Aip05g01374	675	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	12	655	-	-
	Aip05g01374	675	CDD	STKc_IRAK	361	623	-	-
	Aip05g01374	675	Pfam	Salt stress response/antifungal	40	129	IPR002902	-
	Aip05g01374	675	Pfam	Salt stress response/antifungal	150	250	IPR002902	-
	Aip05g01374	675	Pfam	Protein tyrosine and serine/threonine kinase	358	624	IPR001245	GO:0004672\|GO:0006468
	Aip05g01374	675	Gene3D	-	29	132	IPR038408	-
	Aip05g01374	675	Gene3D	-	140	252	IPR038408	-
	Aip05g01374	675	ProSitePatterns	Protein kinases ATP-binding region signature.	361	383	IPR017441	GO:0005524
	Aip05g01374	675	ProSiteProfiles	Protein kinase domain profile.	355	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip05g01374	675	SUPERFAMILY	Protein kinase-like (PK-like)	337	625	IPR011009	-
	Aip05g01374	675	Gene3D	Transferase(Phosphotransferase) domain 1	431	635	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g01374	Aip-Chr5	20465586	20468225	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip05g01374	34	643	Receptor kinase-like Gene Family	AT4G23230	41.494	5.75e-162	478

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Aip05g01374		PK_Tyr_Ser-Thr	1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g01374	-		-	adu:107488598	1324.3