Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01367 ATGTCTCTCTCTCACCCTAAGACTGAGGTTGGATACTTGGTTCCCCTGAATCATAATTTGGAGGAAAACCCTTCAGCTCCCAAGTTACCCATCTCCCATGGCACTAACCTCATTGGTCGCGCCAACATTCCTCTTCCTCTTCCCGACAAGAGGCTTAGCCGCAACCACATCACTTTAACTGCTTCTTCCGACGGATCTGCTCATCTGCTTGTGGAGGGCACGAATCCAGTCGTTGTTAACTCCAGGAACAAAAGAAGGAAGCTCAATTCTCAGGAGAATGCTGCCATTTCTGATGGTGATATACTTGAGCTTATTCCCGGACACCATCTTTTCAAATATGAAGTTTCGGGTGCCACCAAAACTGATAATACACCTTCAGCTGGCACTGGCACCACAAACAAGGAAGCTTCTCACAGCCTTTCGCAGGATGGGAACGGGACTTGCAGTCAGGAGCAAGGAAGAAATGCAGCGGCACGCAAGCCTGGTCATTCTCAATCCGGTGAACACAGTAATGCAGAGGCTATTCGCAATTTCCATATCCCTTCTGAAAAAATACCTTCCACTTTTCGACTTTTGCGTGTGCAGCAGCTACCACCTTGGGCAAATACTTCTTGTGTTGCAATAGATGATGTTATTCAGGGGGATATTCTAGTTGCCATCCTTTCCAACTACATGGTAGACCTTGACTGGTTGGTTCCGGCATGTCCTGCACTTTTGAAAGTCCCCCATGTGTTAGTTATTCATGGCGAGAGTGATGGGAGGGTTGATTATTTGAAGAGAAGTAAACCTGCCAACTGGATTCTGCACAAACCACCATTGCCAATTTCATTTGGGACACATCATTCAAAGGCCATGTTTCTTGTATATCCTCATGGGATAAGGGTGATTGTGCATACAGCGAACTTAATATATGTAGATTGGAATAATAAAACCCAAGGTTTGTGGATGCAAGATTTTCCATGGAAAGATCAAAACAGTCTAAGCAAGGGATCTGTATTTGAAAATGACCTGGTTGAATATCTCAGTATGCTGAAGTGGCCAGAATTCTCTGTTAAGCTTCCTTCCCTTGGAAACTTCAGTATATGTCCATCTTTCTTCAAGAAGTTTGATTATAGTGATGCAATGGTTAGGTTAATTGCATCTGTACCTGGATATCATTCTGGTGCTGGCATTAAAAAGTGGGGACATATGAAACTGCGTTCTTTGCTCCAAGAGTGTACTTTTGACGATGATTTTAAAAGATCTCCACTCATTTATCAGTTCTCCTCCCTTGGCTCTCTTGATGAGAAATGGATGGCTGAGTTGACATCATCAATGTCTGCTGGTTTATCAGAAGATAAAACACCTCTTGGTCTTGGGGAGCCTCAAATAATCTGGCCTACTGTAGAAGATGTCAGATGCTCTTTAGAGGGCTATGCTGCTGGAAATGCAATTCCAAGTCCTTTTAAAAATGTGGAGAAAACATTTCTCAAAAAGTATTGGGCCAAATGGAAAGCAGACCATACTGGTCGAAGCCGTGCTATGCCCCATATAAAGACTTTCACTCGTTATAGTGGTCAGAATCTAGCTTGGTTCTTGTTGACTTCAGCAAATCTTAGCAAAGCTGCCTGGGGAACTCTTCAGAAGAATAATACTCAGTTCATGATTCGCTCATACGAGTTGGGAGTGCTCTTTCTACCAACGATGCTTAAAAGGGCTGGTGGTGGATTTTCATGTACCAGTAATGTTACACAAACTGAGGATAAATATGAAGTGAAGAAAGCAAAACTAGTTAGCCTAAGTGGGCTGAGAAGGGAGCAAACACACTCAACATCTCAACTGACCATTCCGTTACCTGTTCCTTACGAGCTCCCTCCCCAACCTTATTCCTCACAAGATGTTCCCTGGTCCTGGGATCGGCGATATAGTAAGAAAGATGTATATGGCCAAGTTTGGCCACGCACGCGGACACCTCTTTATGCTATAAAGGAACCTCCAGACCCCATTGTTTCTTCACAATTCTCATTTTCATTCTCTCTTTGTTGTCCGAAATCCTTCAAGATGCAAATCTTTGTGAAGACCCTCACTGGAAAGACTATCACTCTCGAGGTCGAGAGTTCCGACACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATCCCACCGGATCAGCAACGTCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAATCCACCCTCCACCTCGTTCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAAAGCTCCGACACCATTGACAACGTCAAGGCTAAAATCCAGGATAAGGAGGGTATTCCACCGGACCAGCAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGGCGCACCTTGGCCGACTACAATATCCAGAAGGAGTCCACCCTTCATCTTGTCCTCCGTCTCAGGGGAGGCATGCAGATTTTTGTTAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTGGAGAGCTCCGACACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAGGGGATCCCCCCGGACCAGCAGAGGTTGATCTTCGCAGGGAAGCAGTTGGAAGATGGAAGGACCCTTGCTGATTACAATATTCAGAAGGAGTCTACTCTTCACCTTGTGCTTCGTCTCCGTGGTGGATTTTAA 2730 0.4564 MSLSHPKTEVGYLVPLNHNLEENPSAPKLPISHGTNLIGRANIPLPLPDKRLSRNHITLTASSDGSAHLLVEGTNPVVVNSRNKRRKLNSQENAAISDGDILELIPGHHLFKYEVSGATKTDNTPSAGTGTTNKEASHSLSQDGNGTCSQEQGRNAAARKPGHSQSGEHSNAEAIRNFHIPSEKIPSTFRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPANWILHKPPLPISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSMLKWPEFSVKLPSLGNFSICPSFFKKFDYSDAMVRLIASVPGYHSGAGIKKWGHMKLRSLLQECTFDDDFKRSPLIYQFSSLGSLDEKWMAELTSSMSAGLSEDKTPLGLGEPQIIWPTVEDVRCSLEGYAAGNAIPSPFKNVEKTFLKKYWAKWKADHTGRSRAMPHIKTFTRYSGQNLAWFLLTSANLSKAAWGTLQKNNTQFMIRSYELGVLFLPTMLKRAGGGFSCTSNVTQTEDKYEVKKAKLVSLSGLRREQTHSTSQLTIPLPVPYELPPQPYSSQDVPWSWDRRYSKKDVYGQVWPRTRTPLYAIKEPPDPIVSSQFSFSFSLCCPKSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01367 909 PANTHER - 681 836 - -
Aip05g01367 909 SUPERFAMILY Ubiquitin-like 756 832 IPR029071 -
Aip05g01367 909 MobiDBLite consensus disorder prediction 118 170 - -
Aip05g01367 909 ProSitePatterns Ubiquitin domain signature. 783 808 IPR019954 -
Aip05g01367 909 CDD Ubl_ubiquitin 681 756 - -
Aip05g01367 909 Pfam Tyrosyl-DNA phosphodiesterase 189 623 IPR010347 GO:0005634|GO:0006281|GO:0008081
Aip05g01367 909 Gene3D - 18 116 - -
Aip05g01367 909 CDD PLDc_Tdp1_1 206 341 - -
Aip05g01367 909 PANTHER UBIQUITIN 750 908 - -
Aip05g01367 909 CDD Ubl_ubiquitin 833 908 - -
Aip05g01367 909 MobiDBLite consensus disorder prediction 118 154 - -
Aip05g01367 909 CDD FHA 12 115 IPR000253 GO:0005515
Aip05g01367 909 SMART ubq_7 757 828 IPR000626 GO:0005515
Aip05g01367 909 SMART ubq_7 833 904 IPR000626 GO:0005515
Aip05g01367 909 SMART ubq_7 681 752 IPR000626 GO:0005515
Aip05g01367 909 SUPERFAMILY SMAD/FHA domain 27 117 IPR008984 GO:0005515
Aip05g01367 909 SUPERFAMILY Ubiquitin-like 832 908 IPR029071 -
Aip05g01367 909 ProSiteProfiles Ubiquitin domain profile. 681 756 IPR000626 GO:0005515
Aip05g01367 909 ProSitePatterns Ubiquitin domain signature. 859 884 IPR019954 -
Aip05g01367 909 PRINTS Ubiquitin signature 733 754 IPR019956 -
Aip05g01367 909 PRINTS Ubiquitin signature 691 711 IPR019956 -
Aip05g01367 909 PRINTS Ubiquitin signature 712 732 IPR019956 -
Aip05g01367 909 ProSiteProfiles Ubiquitin domain profile. 833 908 IPR000626 GO:0005515
Aip05g01367 909 ProSiteProfiles Ubiquitin domain profile. 757 832 IPR000626 GO:0005515
Aip05g01367 909 PANTHER - 750 908 - -
Aip05g01367 909 SUPERFAMILY Phospholipase D/nuclease 185 400 - -
Aip05g01367 909 ProSitePatterns Ubiquitin domain signature. 707 732 IPR019954 -
Aip05g01367 909 Gene3D - 834 909 - -
Aip05g01367 909 Gene3D - 757 833 - -
Aip05g01367 909 Gene3D - 676 756 - -
Aip05g01367 909 Pfam Ubiquitin family 683 754 IPR000626 GO:0005515
Aip05g01367 909 Pfam Ubiquitin family 759 830 IPR000626 GO:0005515
Aip05g01367 909 Pfam Ubiquitin family 835 906 IPR000626 GO:0005515
Aip05g01367 909 SUPERFAMILY Phospholipase D/nuclease 376 646 - -
Aip05g01367 909 CDD Ubl_ubiquitin 757 832 - -
Aip05g01367 909 Pfam FHA domain 24 113 IPR041388 -
Aip05g01367 909 Gene3D Endonuclease Chain A 175 373 - -
Aip05g01367 909 PANTHER UBIQUITIN 681 836 - -
Aip05g01367 909 Gene3D Endonuclease Chain A 376 647 - -
Aip05g01367 909 SUPERFAMILY Ubiquitin-like 674 756 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01367 Aip-Chr5 20277419 20287162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01367 833 908 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 9.51e-45 155