Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01360 ATGTTTCCCACGAACGTGTTCGATTCTCATCAGCAGCACATGATGCTTGATATGTCATCGTCTCACAATGAGAGTGATTTGGGAATAAGGACCGGAGATGATGAGTTCTTTGACATTAAATCTGCTACTGAGATCATCATGGAAGCTCCTTCCGGTGATGATGAGCAAGATCCCAACCAACGACCCAAAAAGAAGGGTTACCATCGCCACACACAGCACCAGATACACGAAATGGAAGCGTTCTTCAAGCAGTGTCCACACCCAGATGACAAGCAAAGAAAGGAGCTGAGCCGTGAGCTGGGATTAGAGCCATTGCAAGTAAAGTTTTGGTTCCAAAACAAGCGGACACAGATGAAGGCACAACATGAGCGGCACGAGAACGCTATATTAAAGGCTGAGAATGAGAAGCTTCGTGCCGAGAACAGCAGATACAAGGAGGCCCTAAGCAATGCTACTTGCCCCAACTGTGGAGGACCTGCTGCCCTTGGTGAAATGTCCTTTGACGAGCAGCACCTCCGGATTGAGAACGCTCGTCTCAAGCAAGAGATTGATAGGATTTCGGGAATAGCGGAGAAATATGTTGGGAAGCCAGTGACTTCCTCTCACAATAGCAATCACATGGCTCCACATTCTCGGTCGCTTGATCTTGGAGTTGGTAGCTATGGTGGAGGATCACAGTCCTCAGCCGGCGGCATGGTTGGAGAGATGTATGGCGGCAGTGAGCTTCTGAGGCCGTTCCCAGTTCCTTGTGATTCGGACAAACCCAGGATTGTGGAGCTTGCTGTGGCAGCTATGGAGGAACTAACAAGACTAGCTCAGGTTGGAGATCCTTTGTGGGTCCAAAGCAACCAGCACTGTACTGAGATTCTAAACGAAGATGAATACTTGAGGACCTTTCCGCCTAGAGTTATAGGCCCAAAAGCGTTGGGCTTGAGATCTGAATCTTCAAGAGAATCCGCGGTGATTATCATGAATCACACTAAACTGGTTGAGATACTAATGGATGTGAACCAATGGTCAACAATGTTCTGTGGTATTGTGTCAAGAGCGTTGACACTTGAAGTGCTTTCAACCGGAGTGGCAGGAAACTATAACGGAGCGTTGCAAGTGATGTCGGCTGAGTTCCAGGTGGCATCGCCTCTTGTTCCAAGCAGAGAGAACTATTTCGTAAGGTACTGCAAGGAACATCCGGATGGGAGATGGACAGTGGTAGATGTGTCGTTGGAGAATGAGAGCAGAAGCCGAAGAAGCAGCCGAAGAAGGCCCTCTGGCTGCTTAATTGAAGAACTCCCAAACGGCTACTCCAAGGTGACATGGATTGAGCATGTAGAAGTGGATGATAGAGGCGTGCATACCCTCTACAAGCCATTGGTGAAGTGCGGGCTGGCCTTTGGAGCTAAGAGGTGGATGGCGACGTTAGAGAGACAATGCGAACGTGTTGCGAGTTACATAGGAGGAGGAGCAGGGGAGCTGTGTGGTACGAGTGCGGAGGGAAGGAGGAGCATGCTGAAGTTGGCAGAGAGAATGGTGATGAGCTTCTGCACTGGAGTGGGAGCTTCCACGGCACATGCATGGACGACTCTGTCGTCGGATATGGATGATGTGAGGGTTATGACCAGGAAGAGCATGGACGACCCTGGCAGACCCCCTGGCATTGTCCTCTGCGCTGCCACTTCCTTCTCCCTCCCTGTTCCTCCCAACACTCTCTTTCATTTCCTCAGAGATCAAAACTCCCGAAGCCAGTGGGATATCCTCTCCAACCGAGGCCTTGTTCAAGAAATCACACACATAGCAAGCTCTTCCAACGCGCTCTCTCTGCTTCGCGTCAATAGTGTGAATTCGAGCCAAAGCAACATGCTGATACTTCAGGAGAGTTGTACAGACTGCAGTGGATCCTATGTGGTATATGCACCCGTGGACATGGCTGCCATGAATATAATTCTTAGTGGCGGGGATCCAGATTACCTGGCCCTGCTTCCCTCGGGTTTTGCGATTCTTCCTGATGGCCTTGCTGCATCTTCTGGAGGCTCTCTCCTCACGGTTGCGTTTCAGATCTTGGTTGACTCCGCCCCAACCGCCAAGCTATCCCTGGGTTCAGTCGCCACTGTTAACACTTTAATTAAGTGCACCGTTGAAAGGATCAAAGCTGCTGTCGTTTCTGACACCACCTCATTTCACAACCTTGCTTCCTAG 2193 0.5021 MFPTNVFDSHQQHMMLDMSSSHNESDLGIRTGDDEFFDIKSATEIIMEAPSGDDEQDPNQRPKKKGYHRHTQHQIHEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENSRYKEALSNATCPNCGGPAALGEMSFDEQHLRIENARLKQEIDRISGIAEKYVGKPVTSSHNSNHMAPHSRSLDLGVGSYGGGSQSSAGGMVGEMYGGSELLRPFPVPCDSDKPRIVELAVAAMEELTRLAQVGDPLWVQSNQHCTEILNEDEYLRTFPPRVIGPKALGLRSESSRESAVIIMNHTKLVEILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVASPLVPSRENYFVRYCKEHPDGRWTVVDVSLENESRSRRSSRRRPSGCLIEELPNGYSKVTWIEHVEVDDRGVHTLYKPLVKCGLAFGAKRWMATLERQCERVASYIGGGAGELCGTSAEGRRSMLKLAERMVMSFCTGVGASTAHAWTTLSSDMDDVRVMTRKSMDDPGRPPGIVLCAATSFSLPVPPNTLFHFLRDQNSRSQWDILSNRGLVQEITHIASSSNALSLLRVNSVNSSQSNMLILQESCTDCSGSYVVYAPVDMAAMNIILSGGDPDYLALLPSGFAILPDGLAASSGGSLLTVAFQILVDSAPTAKLSLGSVATVNTLIKCTVERIKAAVVSDTTSFHNLAS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01360 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 722 IPR042160 -
Aip05g01360 730 SUPERFAMILY Homeodomain-like 48 121 IPR009057 -
Aip05g01360 730 SMART START_1 259 479 IPR002913 GO:0008289
Aip05g01360 730 ProSiteProfiles START domain profile. 525 608 IPR002913 GO:0008289
Aip05g01360 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 18 722 - -
Aip05g01360 730 MobiDBLite consensus disorder prediction 48 72 - -
Aip05g01360 730 Coils Coil 115 150 - -
Aip05g01360 730 Pfam START domain 260 479 IPR002913 GO:0008289
Aip05g01360 730 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Aip05g01360 730 Pfam Homeodomain 64 119 IPR001356 GO:0003677
Aip05g01360 730 Gene3D - 50 137 - -
Aip05g01360 730 Gene3D - 319 478 IPR023393 -
Aip05g01360 730 SUPERFAMILY Bet v1-like 251 481 - -
Aip05g01360 730 CDD homeodomain 64 122 IPR001356 GO:0003677
Aip05g01360 730 SUPERFAMILY Bet v1-like 497 715 - -
Aip05g01360 730 CDD START_ArGLABRA2_like 254 478 - -
Aip05g01360 730 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Aip05g01360 730 ProSiteProfiles START domain profile. 250 482 IPR002913 GO:0008289
Aip05g01360 730 SMART HOX_1 63 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01360 Aip-Chr5 20171841 20174920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01360 1 721 Homeobox Transcription Factor Family AT4G21750 70.235 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip05g01360 START 4e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01360 K09338 - gmx:100815499 1070.46